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INSTALL report for breakpointR on tokay1

This page was generated on 2020-08-13 11:44:26 -0400 (Thu, 13 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE breakpointR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 196/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
breakpointR 1.7.1
David Porubsky
Snapshot Date: 2020-08-12 14:52:00 -0400 (Wed, 12 Aug 2020)
URL: https://git.bioconductor.org/packages/breakpointR
Branch: master
Last Commit: 30030d4
Last Changed Date: 2020-06-03 19:12:11 -0400 (Wed, 03 Jun 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: breakpointR
Version: 1.7.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/breakpointR_1.7.1.tar.gz && rm -rf breakpointR.buildbin-libdir && mkdir breakpointR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=breakpointR.buildbin-libdir breakpointR_1.7.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL breakpointR_1.7.1.zip && rm breakpointR_1.7.1.tar.gz breakpointR_1.7.1.zip
StartedAt: 2020-08-12 18:10:21 -0400 (Wed, 12 Aug 2020)
EndedAt: 2020-08-12 18:11:23 -0400 (Wed, 12 Aug 2020)
EllapsedTime: 62.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/breakpointR_1.7.1.tar.gz && rm -rf breakpointR.buildbin-libdir && mkdir breakpointR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=breakpointR.buildbin-libdir breakpointR_1.7.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL breakpointR_1.7.1.zip && rm breakpointR_1.7.1.tar.gz breakpointR_1.7.1.zip
###
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install for i386

* installing *source* package 'breakpointR' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'breakpointR'
    finding HTML links ... done
    BreakPoint                              html  
    finding level-2 HTML links ... done

    breakSeekr                              html  
    breakpointR-package                     html  
    breakpointr                             html  
    breakpointr2UCSC                        html  
    collapseBins                            html  
    confidenceInterval                      html  
    confidenceInterval.binomial             html  
    createCompositeFile                     html  
    deltaWCalculator                        html  
    deltaWCalculatorVariousWindows          html  
    exportRegions                           html  
    genotype.binom                          html  
    genotype.fisher                         html  
    genotyping                              html  
    hotspotter                              html  
    insertchr                               html  
    loadFromFiles                           html  
    plotBreakpoints                         html  
    plotBreakpointsPerChr                   html  
    plotHeatmap                             html  
    ranges2UCSC                             html  
    readBamFileAsGRanges                    html  
    readConfig                              html  
    removeDoubleSCEs                        html  
    runBreakpointr                          html  
    summarizeBreaks                         html  
    synchronizeReadDir                      html  
    transCoord                              html  
    writeConfig                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'breakpointR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'breakpointR' as breakpointR_1.7.1.zip
* DONE (breakpointR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'breakpointR' successfully unpacked and MD5 sums checked