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INSTALL report for biscuiteer on tokay1

This page was generated on 2020-08-12 11:50:23 -0400 (Wed, 12 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE biscuiteer PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 182/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biscuiteer 1.3.0
"Jacob Morrison"
Snapshot Date: 2020-08-11 14:50:16 -0400 (Tue, 11 Aug 2020)
URL: https://git.bioconductor.org/packages/biscuiteer
Branch: master
Last Commit: 35ac8d6
Last Changed Date: 2020-04-27 15:31:52 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: biscuiteer
Version: 1.3.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/biscuiteer_1.3.0.tar.gz && rm -rf biscuiteer.buildbin-libdir && mkdir biscuiteer.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biscuiteer.buildbin-libdir biscuiteer_1.3.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL biscuiteer_1.3.0.zip && rm biscuiteer_1.3.0.tar.gz biscuiteer_1.3.0.zip
StartedAt: 2020-08-11 18:42:24 -0400 (Tue, 11 Aug 2020)
EndedAt: 2020-08-11 18:44:39 -0400 (Tue, 11 Aug 2020)
EllapsedTime: 135.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/biscuiteer_1.3.0.tar.gz && rm -rf biscuiteer.buildbin-libdir && mkdir biscuiteer.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biscuiteer.buildbin-libdir biscuiteer_1.3.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL biscuiteer_1.3.0.zip && rm biscuiteer_1.3.0.tar.gz biscuiteer_1.3.0.zip
###
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100 4608k  100 4608k    0     0  42.0M      0 --:--:-- --:--:-- --:--:-- 43.6M

install for i386

* installing *source* package 'biscuiteer' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
** help
*** installing help indices
  converting help for package 'biscuiteer'
    finding HTML links ... done
    CpGindex                                html  
    ENSR_subset.hg19                        html  
    ENSR_subset.hg38                        html  
    GRCh37.chromArm                         html  
    GRCh38.chromArm                         html  
    H9state23unmeth.hg19                    html  
    H9state23unmeth.hg38                    html  
    HMM_CpG_islands.hg19                    html  
    HMM_CpG_islands.hg38                    html  
    RRBSeq                                  html  
    WGBSage                                 html  
    WGBSeq                                  html  
    atRegions                               html  
    binCoverage                             html  
    biscuitMetadata                         html  
    biscuiteer-methods                      html  
    biscuiteer-package                      html  
    byChromArm                              html  
    byExtremality                           html  
    checkBiscuitBED                         html  
    clocks                                  html  
    condenseSampleNames                     html  
    extremality                             html  
    fexpit                                  html  
    filterLoci                              html  
    fixAge                                  html  
    fixNAs                                  html  
    flogit                                  html  
    getClock                                html  
    getLogitFracMeth                        html  
    grToSeg                                 html  
    hg19.chromArm                           html  
    hg38.chromArm                           html  
    makeBSseq                               html  
    readBiscuit                             html  
    segToGr                                 html  
    seqinfo.hg19                            html  
    seqinfo.hg38                            html  
    seqinfo.mm10                            html  
    simplifySampleNames                     html  
    summarizeBsSeqOver                      html  
    unionize                                html  
** building package indices
** installing vignettes
   'biscuiteer.Rmd' using 'UTF-8' 
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biscuiteer' ...
** testing if installed package can be loaded
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
* MD5 sums
packaged installation of 'biscuiteer' as biscuiteer_1.3.0.zip
* DONE (biscuiteer)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'biscuiteer' successfully unpacked and MD5 sums checked