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INSTALL report for biotmle on tokay1

This page was generated on 2021-05-06 12:30:03 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the biotmle package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 189/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biotmle 1.14.0  (landing page)
Nima Hejazi
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/biotmle
Branch: RELEASE_3_12
Last Commit: a54105e
Last Changed Date: 2021-02-08 21:10:16 -0400 (Mon, 08 Feb 2021)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: biotmle
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/biotmle_1.14.0.tar.gz && rm -rf biotmle.buildbin-libdir && mkdir biotmle.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biotmle.buildbin-libdir biotmle_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL biotmle_1.14.0.zip && rm biotmle_1.14.0.tar.gz biotmle_1.14.0.zip
StartedAt: 2021-05-05 17:45:10 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:46:18 -0400 (Wed, 05 May 2021)
EllapsedTime: 68.6 seconds
RetCode: 0
Status:   OK   

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/biotmle_1.14.0.tar.gz && rm -rf biotmle.buildbin-libdir && mkdir biotmle.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biotmle.buildbin-libdir biotmle_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL biotmle_1.14.0.zip && rm biotmle_1.14.0.tar.gz biotmle_1.14.0.zip
###
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install for i386

* installing *source* package 'biotmle' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** help
*** installing help indices
  converting help for package 'biotmle'
    finding HTML links ... done
    bioTMLE-class                           html  
    biomarkertmle                           html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpEvWQkA/R.INSTALL1ec45de31b48/biotmle/man/biomarkertmle.Rd:52: file link 'BiocParallelParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpEvWQkA/R.INSTALL1ec45de31b48/biotmle/man/biomarkertmle.Rd:54: file link 'DoparParam' in package 'BiocParallel' does not exist and so has been treated as a topic
    data.frame_OR_EList-class               html  
    eif                                     html  
    exp_biomarkertmle                       html  
    heatmap_ic                              html  
    modtest_ic                              html  
    plot.bioTMLE                            html  
    rnaseq_ic                               html  
    toptable                                html  
    volcano_ic                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package can be loaded from final location
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biotmle' ...
** testing if installed package can be loaded
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
* MD5 sums
packaged installation of 'biotmle' as biotmle_1.14.0.zip
* DONE (biotmle)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'biotmle' successfully unpacked and MD5 sums checked