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INSTALL report for aroma.light on tokay1

This page was generated on 2020-08-07 11:57:26 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE aroma.light PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 74/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
aroma.light 3.19.0
Henrik Bengtsson
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/aroma.light
Branch: master
Last Commit: 38f3c56
Last Changed Date: 2020-04-27 14:13:39 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: aroma.light
Version: 3.19.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/aroma.light_3.19.0.tar.gz && rm -rf aroma.light.buildbin-libdir && mkdir aroma.light.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aroma.light.buildbin-libdir aroma.light_3.19.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL aroma.light_3.19.0.zip && rm aroma.light_3.19.0.tar.gz aroma.light_3.19.0.zip
StartedAt: 2020-08-06 16:37:35 -0400 (Thu, 06 Aug 2020)
EndedAt: 2020-08-06 16:38:06 -0400 (Thu, 06 Aug 2020)
EllapsedTime: 30.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/aroma.light_3.19.0.tar.gz && rm -rf aroma.light.buildbin-libdir && mkdir aroma.light.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aroma.light.buildbin-libdir aroma.light_3.19.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL aroma.light_3.19.0.zip && rm aroma.light_3.19.0.tar.gz aroma.light_3.19.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  412k  100  412k    0     0  10.6M      0 --:--:-- --:--:-- --:--:-- 11.8M

install for i386

* installing *source* package 'aroma.light' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'aroma.light'
    finding HTML links ... done
    1._Calibration_and_Normalization        html  
    Non-documented_objects                  html  
    aroma.light-package                     html  
    averageQuantile                         html  
    backtransformAffine                     html  
    backtransformPrincipalCurve             html  
    calibrateMultiscan                      html  
    callNaiveGenotypes                      html  
    distanceBetweenLines                    html  
    findPeaksAndValleys                     html  
    fitIWPCA                                html  
    fitNaiveGenotypes                       html  
    fitPrincipalCurve                       html  
    fitXYCurve                              html  
    iwpca                                   html  
    likelihood.smooth.spline                html  
    medianPolish                            html  
    normalizeAffine                         html  
    normalizeAverage                        html  
    normalizeCurveFit                       html  
    normalizeDifferencesToAverage           html  
    normalizeFragmentLength                 html  
    normalizeQuantileRank                   html  
    normalizeQuantileRank.matrix            html  
    normalizeQuantileSpline                 html  
    normalizeTumorBoost                     html  
    pairedAlleleSpecificCopyNumbers         html  
    plotDensity                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpsrdkzc/R.INSTALL4bc4bfa7c90/aroma.light/man/plotDensity.Rd:44: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
    plotMvsA                                html  
    plotMvsAPairs                           html  
    plotMvsMPairs                           html  
    plotXYCurve                             html  
    print.SmoothSplineLikelihood            html  
    robustSmoothSpline                      html  
    sampleCorrelations                      html  
    sampleTuples                            html  
    wpca                                    html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'aroma.light' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'aroma.light' as aroma.light_3.19.0.zip
* DONE (aroma.light)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'aroma.light' successfully unpacked and MD5 sums checked