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INSTALL report for affycomp on tokay1

This page was generated on 2020-08-10 12:10:04 -0400 (Mon, 10 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE affycomp PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 24/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affycomp 1.65.0
Rafael A. Irizarry
Snapshot Date: 2020-08-09 14:51:29 -0400 (Sun, 09 Aug 2020)
URL: https://git.bioconductor.org/packages/affycomp
Branch: master
Last Commit: 35dee2c
Last Changed Date: 2020-04-27 14:08:24 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: affycomp
Version: 1.65.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/affycomp_1.65.0.tar.gz && rm -rf affycomp.buildbin-libdir && mkdir affycomp.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affycomp.buildbin-libdir affycomp_1.65.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL affycomp_1.65.0.zip && rm affycomp_1.65.0.tar.gz affycomp_1.65.0.zip
StartedAt: 2020-08-09 16:45:12 -0400 (Sun, 09 Aug 2020)
EndedAt: 2020-08-09 16:45:49 -0400 (Sun, 09 Aug 2020)
EllapsedTime: 36.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/affycomp_1.65.0.tar.gz && rm -rf affycomp.buildbin-libdir && mkdir affycomp.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affycomp.buildbin-libdir affycomp_1.65.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL affycomp_1.65.0.zip && rm affycomp_1.65.0.tar.gz affycomp_1.65.0.zip
###
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100 7135k  100 7135k    0     0  58.7M      0 --:--:-- --:--:-- --:--:-- 60.5M

install for i386

* installing *source* package 'affycomp' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'affycomp'
    finding HTML links ... done
    SD                                      html  
    affycomp.compfigs.auxiliary             html  
    affycomp.figures.auxiliary              html  
    affycomp.table                          html  
    affycompPlot                            html  
    assessAll                               html  
    assessDilution                          html  
    assessSD                                html  
    assessSpikeIn                           html  
    assessSpikeIn2                          html  
    dilution.phenodata                      html  
    exprset.log                             html  
    hgu133a.spikein.phenodata               html  
    mas5.assessment                         html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0kglPr/R.INSTALL14505b707155/affycomp/man/mas5.assessment.Rd:10: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    readin                                  html  
    remove.hgu133a.xhyb                     html  
    spikein.phenodata                       html  
    xhyb                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'affycomp' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affycomp' as affycomp_1.65.0.zip
* DONE (affycomp)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'affycomp' successfully unpacked and MD5 sums checked