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INSTALL report for adaptest on tokay1

This page was generated on 2020-08-12 11:47:39 -0400 (Wed, 12 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE adaptest PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 18/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
adaptest 1.9.1
Weixin Cai
Snapshot Date: 2020-08-11 14:50:16 -0400 (Tue, 11 Aug 2020)
URL: https://git.bioconductor.org/packages/adaptest
Branch: master
Last Commit: 12ef0c6
Last Changed Date: 2020-06-08 10:39:09 -0400 (Mon, 08 Jun 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  ERROR  ERROR  skipped 
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  ERROR  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64 [ ERROR ] ERROR  skipped  skipped 
merida1 macOS 10.14.6 Mojave / x86_64  ERROR  ERROR  skipped  skipped 

Summary

Package: adaptest
Version: 1.9.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/adaptest_1.9.1.tar.gz && rm -rf adaptest.buildbin-libdir && mkdir adaptest.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=adaptest.buildbin-libdir adaptest_1.9.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL adaptest_1.9.1.zip && rm adaptest_1.9.1.tar.gz adaptest_1.9.1.zip
StartedAt: 2020-08-11 17:37:19 -0400 (Tue, 11 Aug 2020)
EndedAt: 2020-08-11 17:37:47 -0400 (Tue, 11 Aug 2020)
EllapsedTime: 27.5 seconds
RetCode: 1
Status:  ERROR  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/adaptest_1.9.1.tar.gz && rm -rf adaptest.buildbin-libdir && mkdir adaptest.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=adaptest.buildbin-libdir adaptest_1.9.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL adaptest_1.9.1.zip && rm adaptest_1.9.1.tar.gz adaptest_1.9.1.zip
###
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100 1084k  100 1084k    0     0  20.6M      0 --:--:-- --:--:-- --:--:-- 22.5M

install for i386

* installing *source* package 'adaptest' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'adaptest'
    finding HTML links ... done
    adapTMLE-class                          html  
    adaptest                                html  
    adaptest_old                            html  
    bioadaptest                             html  
    cv_param_est                            html  
    data_adapt                              html  
    get_composition                         html  
    get_pval                                html  
    get_results_adaptmle                    html  
    get_significant_biomarker               html  
    plot.data_adapt                         html  
    print.data_adapt                        html  
    rank_DE                                 html  
    rank_ttest                              html  
    simulated_array                         html  
    simulated_treatment                     html  
    summary.data_adapt                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for 'adaptest':
 .onAttach failed in attachNamespace() for 'adaptest', details:
  call: sprintf("Package '%s' is deprecated and will be removed from Bioconductor\n         version %s", 
  error: object 'pkgname' not found
Error: loading failed
Execution halted
ERROR: loading failed
* removing 'C:/Users/biocbuild/bbs-3.12-bioc/meat/adaptest.buildbin-libdir/adaptest'