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INSTALL report for GGtools on tokay1

This page was generated on 2021-05-06 12:31:30 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the GGtools package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 739/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GGtools 5.26.0  (landing page)
VJ Carey
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/GGtools
Branch: RELEASE_3_12
Last Commit: e3aed73
Last Changed Date: 2020-10-27 10:29:23 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    ERROR  
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: GGtools
Version: 5.26.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GGtools_5.26.0.tar.gz && rm -rf GGtools.buildbin-libdir && mkdir GGtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GGtools.buildbin-libdir GGtools_5.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GGtools_5.26.0.zip && rm GGtools_5.26.0.tar.gz GGtools_5.26.0.zip
StartedAt: 2021-05-05 18:32:43 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:36:12 -0400 (Wed, 05 May 2021)
EllapsedTime: 209.4 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GGtools_5.26.0.tar.gz && rm -rf GGtools.buildbin-libdir && mkdir GGtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GGtools.buildbin-libdir GGtools_5.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GGtools_5.26.0.zip && rm GGtools_5.26.0.tar.gz GGtools_5.26.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 28 69.3M   28 20.0M    0     0  68.6M      0  0:00:01 --:--:--  0:00:01 68.8M
100 69.3M  100 69.3M    0     0  55.3M      0  0:00:01  0:00:01 --:--:-- 55.3M

install for i386

* installing *source* package 'GGtools' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'GGBase' is deprecated and will be removed from Bioconductor
  version 3.13 
** help
*** installing help indices
  converting help for package 'GGtools'
    finding HTML links ... done
    All.cis                                 html  
    CisConfig-class                         html  
    finding level-2 HTML links ... done

    EqAppr-class                            html  
    GGtools-package                         html  
    TransConfig-class                       html  
    appraise                                html  
    b1                                      html  
    best.cis.eQTLs                          html  
    best.trans.eQTLs                        html  
    bindmaf                                 html  
    cgff2dt                                 html  
    cisAssoc                                html  
    cisRun-class                            html  
    ciseqByCluster                          html  
    collectBest                             html  
    concatCis                               html  
    eqBox                                   html  
    eqsens_dt                               html  
    eqtlTests                               html  
    eqtlTests.me                            html  
    eqtlTestsManager-class                  html  
    ex                                      html  
    getCisMap                               html  
    gffprocess                              html  
    gwSnpTests                              html  
    hmm878                                  html  
    pifdr                                   html  
    qqhex                                   html  
    richNull                                html  
    sampsInVCF                              html  
    scoresCis                               html  
    sensanal                                html  
    sensiCisInput-class                     html  
    sensiCisOutput-class                    html  
    simpleTiling                            html  
    snplocsDefault                          html  
    strMultPop                              html  
    transManager-class                      html  
    transScores                             html  
    transTab                                html  
    transeqByCluster                        html  
    vcf2sm                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'GGBase' is deprecated and will be removed from Bioconductor
  version 3.13
Warning: Package 'GGtools' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'GGBase' is deprecated and will be removed from Bioconductor
  version 3.13
Warning: Package 'GGtools' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GGtools' ...
** testing if installed package can be loaded
Warning: Package 'GGBase' is deprecated and will be removed from Bioconductor
  version 3.13
Warning: Package 'GGtools' is deprecated and will be removed from Bioconductor
  version 3.13
* MD5 sums
packaged installation of 'GGtools' as GGtools_5.26.0.zip
* DONE (GGtools)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'GGtools' successfully unpacked and MD5 sums checked