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INSTALL report for CATALYST on tokay1

This page was generated on 2020-09-21 11:14:45 -0400 (Mon, 21 Sep 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE CATALYST PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 229/1912HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CATALYST 1.13.1
Helena L. Crowell
Snapshot Date: 2020-09-20 14:41:51 -0400 (Sun, 20 Sep 2020)
URL: https://git.bioconductor.org/packages/CATALYST
Branch: master
Last Commit: 78d76eb
Last Changed Date: 2020-05-06 03:40:47 -0400 (Wed, 06 May 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
riesling1 Windows Server 2019 Standard / x64  OK  ERROR  skipped  skipped 
merida1 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: CATALYST
Version: 1.13.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/CATALYST_1.13.1.tar.gz && rm -rf CATALYST.buildbin-libdir && mkdir CATALYST.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CATALYST.buildbin-libdir CATALYST_1.13.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL CATALYST_1.13.1.zip && rm CATALYST_1.13.1.tar.gz CATALYST_1.13.1.zip
StartedAt: 2020-09-20 18:22:30 -0400 (Sun, 20 Sep 2020)
EndedAt: 2020-09-20 18:24:06 -0400 (Sun, 20 Sep 2020)
EllapsedTime: 96.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/CATALYST_1.13.1.tar.gz && rm -rf CATALYST.buildbin-libdir && mkdir CATALYST.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CATALYST.buildbin-libdir CATALYST_1.13.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL CATALYST_1.13.1.zip && rm CATALYST_1.13.1.tar.gz CATALYST_1.13.1.zip
###
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100 3579k  100 3579k    0     0  34.0M      0 --:--:-- --:--:-- --:--:-- 35.3M

install for i386

* installing *source* package 'CATALYST' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CATALYST'
    finding HTML links ... done
    SCE-accessors                           html  
    finding level-2 HTML links ... done

    adaptSpillmat                           html  
    applyCutoffs                            html  
    assignPrelim                            html  
    cluster                                 html  
    compCytof                               html  
    computeSpillmat                         html  
    data                                    html  
    estCutoffs                              html  
    extractClusters                         html  
    filterSCE                               html  
    guessPanel                              html  
    mergeClusters                           html  
    normCytof                               html  
    pbMDS                                   html  
    plotAbundances                          html  
    plotClusterExprs                        html  
    plotClusterHeatmap                      html  
    plotCodes                               html  
    plotCounts                              html  
    plotDR                                  html  
    plotDiffHeatmap                         html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpuu9ROA/R.INSTALL27c861b3376f/CATALYST/man/plotDiffHeatmap.Rd:82: file link 'RColorBrewer' in package 'RColorBrewer' does not exist and so has been treated as a topic
    plotEvents                              html  
    plotExprHeatmap                         html  
    plotExprs                               html  
    plotFreqHeatmap                         html  
    plotMahal                               html  
    plotMedExprs                            html  
    plotMultiHeatmap                        html  
    plotNRS                                 html  
    plotScatter                             html  
    plotSpillmat                            html  
    plotYields                              html  
    prepData                                html  
    runDR                                   html  
    sce2fcs                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CATALYST' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CATALYST' as CATALYST_1.13.1.zip
* DONE (CATALYST)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'CATALYST' successfully unpacked and MD5 sums checked