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BUILD BIN report for BufferedMatrix on merida1

This page was generated on 2020-08-12 11:52:55 -0400 (Wed, 12 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BufferedMatrix PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 205/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BufferedMatrix 1.53.0
Ben Bolstad
Snapshot Date: 2020-08-11 14:50:16 -0400 (Tue, 11 Aug 2020)
URL: https://git.bioconductor.org/packages/BufferedMatrix
Branch: master
Last Commit: 35d9382
Last Changed Date: 2020-04-27 14:14:34 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BufferedMatrix
Version: 1.53.0
Command: rm -rf BufferedMatrix.buildbin-libdir && mkdir BufferedMatrix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrix_1.53.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BufferedMatrix.buildbin-libdir
StartedAt: 2020-08-12 06:20:12 -0400 (Wed, 12 Aug 2020)
EndedAt: 2020-08-12 06:21:13 -0400 (Wed, 12 Aug 2020)
EllapsedTime: 61.5 seconds
RetCode: 0
Status:  OK 
PackageFile: BufferedMatrix_1.53.0.tgz
PackageFileSize: 569.4 KiB

Command output

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### Running command:
###
###   rm -rf BufferedMatrix.buildbin-libdir && mkdir BufferedMatrix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrix_1.53.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BufferedMatrix.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BufferedMatrix.buildbin-libdir BufferedMatrix_1.53.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BufferedMatrix’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c RBufferedMatrix.c -o RBufferedMatrix.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c doubleBufferedMatrix.c -o doubleBufferedMatrix.o
doubleBufferedMatrix.c:1580:7: warning: logical not is only applied to the left hand side of this bitwise operator [-Wlogical-not-parentheses]
  if (!(Matrix->readonly) & setting){
      ^                   ~
doubleBufferedMatrix.c:1580:7: note: add parentheses after the '!' to evaluate the bitwise operator first
  if (!(Matrix->readonly) & setting){
      ^
       (                           )
doubleBufferedMatrix.c:1580:7: note: add parentheses around left hand side expression to silence this warning
  if (!(Matrix->readonly) & setting){
      ^
      (                  )
doubleBufferedMatrix.c:3327:12: warning: unused function 'sort_double' [-Wunused-function]
static int sort_double(const double *a1,const double *a2){
           ^
2 warnings generated.
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c doubleBufferedMatrix_C_tests.c -o doubleBufferedMatrix_C_tests.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init_package.c -o init_package.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BufferedMatrix.so RBufferedMatrix.o doubleBufferedMatrix.o doubleBufferedMatrix_C_tests.o init_package.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/BufferedMatrix.buildbin-libdir/00LOCK-BufferedMatrix/00new/BufferedMatrix/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘rowMeans’ in package ‘BufferedMatrix’
Creating a new generic function for ‘rowSums’ in package ‘BufferedMatrix’
Creating a new generic function for ‘colMeans’ in package ‘BufferedMatrix’
Creating a new generic function for ‘colSums’ in package ‘BufferedMatrix’
Creating a generic function for ‘ncol’ from package ‘base’ in package ‘BufferedMatrix’
Creating a generic function for ‘nrow’ from package ‘base’ in package ‘BufferedMatrix’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BufferedMatrix)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/BufferedMatrix.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/BufferedMatrix.so"