Back to Multiple platform build/check report for BioC 3.12
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for BiRewire on tokay1

This page was generated on 2020-08-10 12:15:48 -0400 (Mon, 10 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BiRewire PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 181/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiRewire 3.21.0
Andrea Gobbi
Snapshot Date: 2020-08-09 14:51:29 -0400 (Sun, 09 Aug 2020)
URL: https://git.bioconductor.org/packages/BiRewire
Branch: master
Last Commit: 7ab05ed
Last Changed Date: 2020-04-27 14:36:26 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiRewire
Version: 3.21.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BiRewire_3.21.0.tar.gz && rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiRewire.buildbin-libdir BiRewire_3.21.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BiRewire_3.21.0.zip && rm BiRewire_3.21.0.tar.gz BiRewire_3.21.0.zip
StartedAt: 2020-08-09 17:09:07 -0400 (Sun, 09 Aug 2020)
EndedAt: 2020-08-09 17:09:51 -0400 (Sun, 09 Aug 2020)
EllapsedTime: 43.3 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BiRewire_3.21.0.tar.gz && rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiRewire.buildbin-libdir BiRewire_3.21.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BiRewire_3.21.0.zip && rm BiRewire_3.21.0.tar.gz BiRewire_3.21.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  296k  100  296k    0     0  8373k      0 --:--:-- --:--:-- --:--:-- 9269k

install for i386

* installing *source* package 'BiRewire' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
               ~^~~
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
               ~^~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c interface.c -o interface.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BiRewire.buildbin-libdir/00LOCK-BiRewire/00new/BiRewire/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiRewire'
    finding HTML links ... done
    BRCA_binary_matrix                      html  
    BiRewire-package                        html  
    birewire.analysis.bipartite             html  
    finding level-2 HTML links ... done

    birewire.analysis.dsg                   html  
    birewire.analysis.undirected            html  
    birewire.bipartite.from.incidence       html  
    birewire.build.dsg                      html  
    birewire.induced.bipartite              html  
    birewire.load.dsg                       html  
    birewire.rewire.bipartite               html  
    birewire.rewire.bipartite.and.projections
                                            html  
    birewire.rewire.dsg                     html  
    birewire.rewire.undirected              html  
    birewire.sampler.bipartite              html  
    birewire.sampler.dsg                    html  
    birewire.sampler.undirected             html  
    birewire.similarity                     html  
    birewire.similarity.dsg                 html  
    birewire.slum.to.sparseMatrix           html  
    birewire.visual.monitoring.bipartite    html  
    birewire.visual.monitoring.dsg          html  
    birewire.visual.monitoring.undirected   html  
    test_dsg                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BiRewire' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
               ~^~~
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
               ~^~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c interface.c -o interface.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BiRewire.buildbin-libdir/BiRewire/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiRewire' as BiRewire_3.21.0.zip
* DONE (BiRewire)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BiRewire' successfully unpacked and MD5 sums checked