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BUILD BIN report for BiRewire on merida1

This page was generated on 2021-04-14 12:12:56 -0400 (Wed, 14 Apr 2021).

To the developers/maintainers of the BiRewire package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 191/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiRewire 3.22.0  (landing page)
Andrea Gobbi
Snapshot Date: 2021-04-13 14:50:13 -0400 (Tue, 13 Apr 2021)
URL: https://git.bioconductor.org/packages/BiRewire
Branch: RELEASE_3_12
Last Commit: 161ba9f
Last Changed Date: 2020-10-27 10:52:46 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: BiRewire
Version: 3.22.0
Command: rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BiRewire_3.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BiRewire.buildbin-libdir
StartedAt: 2021-04-14 08:04:05 -0400 (Wed, 14 Apr 2021)
EndedAt: 2021-04-14 08:05:07 -0400 (Wed, 14 Apr 2021)
EllapsedTime: 62.7 seconds
RetCode: 0
Status:   OK  
PackageFile: BiRewire_3.22.0.tgz
PackageFileSize: 632.6 KiB

Command output

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###
### Running command:
###
###   rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BiRewire_3.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BiRewire.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BiRewire.buildbin-libdir BiRewire_3.22.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BiRewire’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c BiRewire.c -o BiRewire.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c interface.c -o interface.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BiRewire.so BiRewire.o interface.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/BiRewire.buildbin-libdir/00LOCK-BiRewire/00new/BiRewire/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiRewire)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BiRewire.buildbin-libdir/BiRewire/libs/BiRewire.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "BiRewire.buildbin-libdir/BiRewire/libs/BiRewire.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "BiRewire.buildbin-libdir/BiRewire/libs/BiRewire.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "BiRewire.buildbin-libdir/BiRewire/libs/BiRewire.so"