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BUILD BIN report for BUSpaRse on merida1

This page was generated on 2020-08-09 12:43:06 -0400 (Sun, 09 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BUSpaRse PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 211/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BUSpaRse 1.3.1
Lambda Moses
Snapshot Date: 2020-08-08 14:51:01 -0400 (Sat, 08 Aug 2020)
URL: https://git.bioconductor.org/packages/BUSpaRse
Branch: master
Last Commit: 3c9922c
Last Changed Date: 2020-06-02 19:36:58 -0400 (Tue, 02 Jun 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BUSpaRse
Version: 1.3.1
Command: rm -rf BUSpaRse.buildbin-libdir && mkdir BUSpaRse.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BUSpaRse_1.3.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BUSpaRse.buildbin-libdir
StartedAt: 2020-08-09 07:44:59 -0400 (Sun, 09 Aug 2020)
EndedAt: 2020-08-09 07:46:47 -0400 (Sun, 09 Aug 2020)
EllapsedTime: 107.9 seconds
RetCode: 0
Status:  OK 
PackageFile: BUSpaRse_1.3.1.tgz
PackageFileSize: 808.4 KiB

Command output

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### Running command:
###
###   rm -rf BUSpaRse.buildbin-libdir && mkdir BUSpaRse.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BUSpaRse_1.3.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BUSpaRse.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BUSpaRse.buildbin-libdir BUSpaRse_1.3.1.tar.gz'
>>>>>>> 

* installing *source* package ‘BUSpaRse’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppProgress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include    -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppProgress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include    -fPIC  -Wall -g -O2  -c fill_cell_gene.cpp -o fill_cell_gene.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BUSpaRse.so RcppExports.o fill_cell_gene.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/BUSpaRse.buildbin-libdir/00LOCK-BUSpaRse/00new/BUSpaRse/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BUSpaRse)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BUSpaRse.buildbin-libdir/BUSpaRse/libs/BUSpaRse.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "BUSpaRse.buildbin-libdir/BUSpaRse/libs/BUSpaRse.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "BUSpaRse.buildbin-libdir/BUSpaRse/libs/BUSpaRse.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "BUSpaRse.buildbin-libdir/BUSpaRse/libs/BUSpaRse.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "BUSpaRse.buildbin-libdir/BUSpaRse/libs/BUSpaRse.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "BUSpaRse.buildbin-libdir/BUSpaRse/libs/BUSpaRse.so"