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BUILD report for ArrayTV on merida1

This page was generated on 2020-08-12 11:56:14 -0400 (Wed, 12 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ArrayTV PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 81/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ArrayTV 1.27.1
Eitan Halper-Stromberg
Snapshot Date: 2020-08-11 14:50:16 -0400 (Tue, 11 Aug 2020)
URL: https://git.bioconductor.org/packages/ArrayTV
Branch: master
Last Commit: 2629952
Last Changed Date: 2020-06-08 09:58:02 -0400 (Mon, 08 Jun 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
merida1 macOS 10.14.6 Mojave / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: ArrayTV
Version: 1.27.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ArrayTV
StartedAt: 2020-08-11 19:00:29 -0400 (Tue, 11 Aug 2020)
EndedAt: 2020-08-11 19:01:31 -0400 (Tue, 11 Aug 2020)
EllapsedTime: 61.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ArrayTV
###
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* checking for file ‘ArrayTV/DESCRIPTION’ ... OK
* preparing ‘ArrayTV’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ArrayTV.Rnw’ using Sweave
Warning: Package 'ArrayTV' is deprecated and will be removed from Bioconductor
  version 3.13
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: BSgenome
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:base’:

    expand.grid

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: XVector

Attaching package: ‘Biostrings’

The following object is masked from ‘package:base’:

    strsplit

Loading required package: rtracklayer

Error: processing vignette 'ArrayTV.Rnw' failed with diagnostics:
 chunk 6 (label = tvscorefig) 
Error in plot.xy(xy, type, ...) : invalid color name 'NimbleGen'

--- failed re-building ‘ArrayTV.Rnw’

SUMMARY: processing the following file failed:
  ‘ArrayTV.Rnw’

Error: Vignette re-building failed.
Execution halted