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BUILD BIN report for ADAM on merida1

This page was generated on 2020-09-19 10:26:58 -0400 (Sat, 19 Sep 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ADAM PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 16/1912HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ADAM 1.5.0
Jose Luiz Rybarczyk Filho
Snapshot Date: 2020-09-18 14:43:25 -0400 (Fri, 18 Sep 2020)
URL: https://git.bioconductor.org/packages/ADAM
Branch: master
Last Commit: a72dd0b
Last Changed Date: 2020-04-27 15:21:48 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  OK  OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: ADAM
Version: 1.5.0
Command: rm -rf ADAM.buildbin-libdir && mkdir ADAM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ADAM_1.5.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ADAM.buildbin-libdir
StartedAt: 2020-09-19 09:34:26 -0400 (Sat, 19 Sep 2020)
EndedAt: 2020-09-19 09:35:37 -0400 (Sat, 19 Sep 2020)
EllapsedTime: 71.8 seconds
RetCode: 0
Status:  OK 
PackageFile: ADAM_1.5.0.tgz
PackageFileSize: 417.1 KiB

Command output

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### Running command:
###
###   rm -rf ADAM.buildbin-libdir && mkdir ADAM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ADAM_1.5.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ADAM.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ADAM.buildbin-libdir ADAM_1.5.0.tar.gz'
>>>>>>> 

* installing *source* package ‘ADAM’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c MakeBootstrap.cpp -o MakeBootstrap.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ADAM.so MakeBootstrap.o RcppExports.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/ADAM.buildbin-libdir/00LOCK-ADAM/00new/ADAM/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ADAM)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ADAM.buildbin-libdir/ADAM/libs/ADAM.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "ADAM.buildbin-libdir/ADAM/libs/ADAM.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "ADAM.buildbin-libdir/ADAM/libs/ADAM.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "ADAM.buildbin-libdir/ADAM/libs/ADAM.so"