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INSTALL report for ABAEnrichment on tokay1

This page was generated on 2021-02-22 12:36:46 -0500 (Mon, 22 Feb 2021).

To the developers/maintainers of the ABAEnrichment package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 7/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ABAEnrichment 1.20.0
Steffi Grote
Snapshot Date: 2021-02-21 14:52:07 -0500 (Sun, 21 Feb 2021)
URL: https://git.bioconductor.org/packages/ABAEnrichment
Branch: RELEASE_3_12
Last Commit: 608433a
Last Changed Date: 2020-10-27 11:07:16 -0500 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: ABAEnrichment
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/ABAEnrichment_1.20.0.tar.gz && rm -rf ABAEnrichment.buildbin-libdir && mkdir ABAEnrichment.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ABAEnrichment.buildbin-libdir ABAEnrichment_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL ABAEnrichment_1.20.0.zip && rm ABAEnrichment_1.20.0.tar.gz ABAEnrichment_1.20.0.zip
StartedAt: 2021-02-21 17:26:21 -0500 (Sun, 21 Feb 2021)
EndedAt: 2021-02-21 17:27:22 -0500 (Sun, 21 Feb 2021)
EllapsedTime: 60.4 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/ABAEnrichment_1.20.0.tar.gz && rm -rf ABAEnrichment.buildbin-libdir && mkdir ABAEnrichment.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ABAEnrichment.buildbin-libdir ABAEnrichment_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL ABAEnrichment_1.20.0.zip && rm ABAEnrichment_1.20.0.tar.gz ABAEnrichment_1.20.0.zip
###
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install for i386

* installing *source* package 'ABAEnrichment' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c unlock_environment.cc -o unlock_environment.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ABAEnrichment.dll tmp.def RcppExports.o unlock_environment.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/ABAEnrichment.buildbin-libdir/00LOCK-ABAEnrichment/00new/ABAEnrichment/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ABAEnrichment'
    finding HTML links ... done
    aba_enrich                              html  
    get_annotated_genes                     html  
    get_expression                          html  
    get_id                                  html  
    get_name                                html  
    get_sampled_substructures               html  
    get_superstructures                     html  
    plot_expression                         html  
    finding level-2 HTML links ... done

** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ABAEnrichment' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c unlock_environment.cc -o unlock_environment.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ABAEnrichment.dll tmp.def RcppExports.o unlock_environment.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/ABAEnrichment.buildbin-libdir/ABAEnrichment/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ABAEnrichment' as ABAEnrichment_1.20.0.zip
* DONE (ABAEnrichment)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'ABAEnrichment' successfully unpacked and MD5 sums checked