smokingMouse

DOI: 10.18129/B9.bioc.smokingMouse  

This is the development version of smokingMouse; for the stable release version, see smokingMouse.

Provides access to smokingMouse project data

Bioconductor version: Development (3.19)

This is an ExperimentHub package that provides access to the data at the gene, exon, transcript and junction level used in the analyses of the smokingMouse project. See https://github.com/LieberInstitute/smokingMouse_Indirects. This datasets contain the expression counts of genes, transcripts, exons and exon-exon junctions across 208 mice samples from pup and adult brains and adult blood. They also contain relevant information of these samples and features, such as conditions, QC metrics and if they were used after filtering steps and also if the features were differently expressed in the different experiments.

Author: Daianna Gonzalez-Padilla [aut, cre]

Maintainer: Daianna Gonzalez-Padilla <glezdaianna at gmail.com>

Citation (from within R, enter citation("smokingMouse")):

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("smokingMouse")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("smokingMouse")

 

HTML R Script Introduction to smokingMouse
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData
Version 1.1.0
License Artistic-2.0
Depends
Imports
LinkingTo
Suggests ExperimentHub, AnnotationHubData, BiocStyle, covr, ExperimentHubData, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL https://github.com/LieberInstitute/smokingMouse
BugReports https://support.bioconductor.org/t/smokingMouse
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package smokingMouse_1.1.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/smokingMouse
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/smokingMouse
Package Short Url https://bioconductor.org/packages/smokingMouse/
Package Downloads Report Download Stats

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