Welcome to the new bioconductor.org!

etec16s

This is the development version of etec16s; for the stable release version, see etec16s.

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment


Bioconductor version: Development (3.19)

16S rRNA gene sequencing data to study changes in the faecal microbiota of 12 volunteers during a human challenge study with ETEC (H10407) and subsequent treatment with ciprofloxacin.

Author: Joseph N. Paulson

Maintainer: Joseph N. Paulson <jpaulson at jimmy.harvard.edu>

Citation (from within R, enter citation("etec16s")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("etec16s")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("etec16s")
etec16s PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, MicrobiomeData, SequencingData
Version 1.31.0
License Artistic-2.0
Depends R (>= 3.3), Biobase, metagenomeSeq(>= 1.12.0)
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package etec16s_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/etec16s
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/etec16s
Package Short Url https://bioconductor.org/packages/etec16s/
Package Downloads Report Download Stats