DOI: 10.18129/B9.bioc.multiWGCNA  

This is the development version of multiWGCNA; for the stable release version, see multiWGCNA.


Bioconductor version: Development (3.19)

An R package for deeping mining gene co-expression networks in multi-trait expression data. Provides functions for analyzing, comparing, and visualizing WGCNA networks across conditions. multiWGCNA was designed to handle the common case where there are multiple biologically meaningful sample traits, such as disease vs wildtype across development or anatomical region.

Author: Dario Tommasini [aut, cre] , Brent Fogel [aut, ctb]

Maintainer: Dario Tommasini <dtommasini0 at>

Citation (from within R, enter citation("multiWGCNA")):


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HTML R Script Astrocyte multiWGCNA network
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biocViews Clustering, DifferentialExpression, GeneExpression, RNASeq, Regression, Sequencing, Software
Version 1.1.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License GPL-3
Depends R (>= 4.3.0), ggalluvial
Imports stringr, readr, WGCNA, dplyr, reshape2, data.table, patchwork, scales, igraph, flashClust, ggplot2, dcanr, cowplot, ggrepel, methods, SummarizedExperiment
Suggests BiocStyle, doParallel, ExperimentHub, knitr, markdown, rmarkdown, testthat (>= 3.0.0), vegan
Depends On Me
Imports Me
Suggests Me multiWGCNAdata
Links To Me
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