DOI: 10.18129/B9.bioc.hicVennDiagram  

This is the development version of hicVennDiagram; for the stable release version, see hicVennDiagram.

Venn Diagram for genomic interaction data

Bioconductor version: Development (3.19)

A package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.

Author: Jianhong Ou [aut, cre]

Maintainer: Jianhong Ou <jianhong.ou at duke.edu>

Citation (from within R, enter citation("hicVennDiagram")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script hicVennDiagram Vignette: overview
PDF   Reference Manual
Text   NEWS


biocViews DNA3DStructure, HiC, Software, Visualization
Version 1.1.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License GPL-3
Depends R (>= 4.3.0)
Imports InteractionSet, rtracklayer, ggplot2, ComplexUpset, reshape2, eulerr, S4Vectors, methods, utils, htmlwidgets, svglite
Suggests BiocStyle, knitr, rmarkdown, testthat, GenomicRanges, ChIPpeakAnno, grid
URL https://github.com/jianhong/hicVennDiagram
BugReports https://github.com/jianhong/hicVennDiagram/issues
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hicVennDiagram_1.1.0.tar.gz
Windows Binary hicVennDiagram_1.1.0.zip (64-bit only)
macOS Binary (x86_64) hicVennDiagram_1.1.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/hicVennDiagram
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hicVennDiagram
Bioc Package Browser https://code.bioconductor.org/browse/hicVennDiagram/
Package Short Url https://bioconductor.org/packages/hicVennDiagram/
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