Welcome to the new bioconductor.org!


This is the development version of Repitools; for the stable release version, see Repitools.

Epigenomic tools

Bioconductor version: Development (3.19)

Tools for the analysis of enrichment-based epigenomic data. Features include summarization and visualization of epigenomic data across promoters according to gene expression context, finding regions of differential methylation/binding, BayMeth for quantifying methylation etc.

Author: Mark Robinson <mark.robinson at imls.uzh.ch>, Dario Strbenac <dario.strbenac at sydney.edu.au>, Aaron Statham <a.statham at garvan.org.au>, Andrea Riebler <andrea.riebler at math.ntnu.no>

Maintainer: Mark Robinson <mark.robinson at imls.uzh.ch>

Citation (from within R, enter citation("Repitools")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews DNAMethylation, GeneExpression, MethylSeq, Software
Version 1.49.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License LGPL (>= 2)
Depends R (>= 3.0.0), methods, BiocGenerics(>= 0.8.0)
Imports parallel, S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), GenomeInfoDb, GenomicRanges, Biostrings, Rsamtools, GenomicAlignments, rtracklayer, BSgenome(>= 1.47.3), gplots, grid, MASS, gsmoothr, edgeR(>= 3.4.0), DNAcopy, Ringo, Rsolnp, cluster
System Requirements
See More
Suggests ShortRead, BSgenome.Hsapiens.UCSC.hg18
Linking To
Depends On Me
Imports Me OutSplice
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/Repitools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Repitools
Package Short Url https://bioconductor.org/packages/Repitools/
Package Downloads Report Download Stats