MouseFM

DOI: 10.18129/B9.bioc.MouseFM    

This is the development version of MouseFM; to use it, please install the devel version of Bioconductor.

In-silico methods for genetic finemapping in inbred mice

Bioconductor version: Development (3.12)

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Author: Matthias Munz [aut, cre] , Inken Wohlers [aut] , Hauke Busch [aut]

Maintainer: Matthias Munz <matthias.munz at gmx.de>

Citation (from within R, enter citation("MouseFM")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MouseFM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseFM")

 

HTML R Script Fetch
HTML R Script Finemapping
HTML R Script Prioritization
PDF   Reference Manual
Text   NEWS

Details

biocViews BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation
Version 0.99.9
In Bioconductor since BioC 3.12 (R-4.0)
License GPL-3
Depends R (>= 4.0.0)
Imports httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, GenomeInfoDb, methods, biomaRt, stats, IRanges
LinkingTo
Suggests BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports https://github.com/matmu/MouseFM/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseFM_0.99.9.tar.gz
Windows Binary MouseFM_0.99.9.zip
macOS 10.13 (High Sierra) MouseFM_0.99.9.tgz
Source Repository git clone https://git.bioconductor.org/packages/MouseFM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseFM
Package Short Url https://bioconductor.org/packages/MouseFM/
Package Downloads Report Download Stats

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