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This is the development version of MDTS; for the stable release version, see MDTS.

Detection of de novo deletion in targeted sequencing trios

Bioconductor version: Development (3.19)

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Author: Jack M.. Fu [aut, cre]

Maintainer: Jack M.. Fu <jmfu at jhsph.edu>

Citation (from within R, enter citation("MDTS")):


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biocViews Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology
Version 1.23.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr
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Suggests testthat, knitr
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Follow Installation instructions to use this package in your R session.

Source Package MDTS_1.23.0.tar.gz
Windows Binary MDTS_1.23.0.zip
macOS Binary (x86_64) MDTS_1.23.0.tgz
macOS Binary (arm64) MDTS_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MDTS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MDTS
Bioc Package Browser https://code.bioconductor.org/browse/MDTS/
Package Short Url https://bioconductor.org/packages/MDTS/
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