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GeneOverlap

This is the development version of GeneOverlap; for the stable release version, see GeneOverlap.

Test and visualize gene overlaps


Bioconductor version: Development (3.19)

Test two sets of gene lists and visualize the results.

Author: Li Shen, Icahn School of Medicine at Mount Sinai <shenli.sam at gmail.com>

Maintainer: Ant<c3><b3>nio Miguel de Jesus Domingues, Max-Planck Institute for Cell Biology and Genetics <amjdomingues at gmail.com>

Citation (from within R, enter citation("GeneOverlap")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GeneOverlap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneOverlap")
Testing and visualizing gene overlaps with the "GeneOverlap" package PDF R Script
Reference Manual PDF

Details

biocViews MultipleComparison, Software, Visualization
Version 1.39.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-3
Depends
Imports stats, RColorBrewer, gplots, methods
System Requirements
URL http://shenlab-sinai.github.io/shenlab-sinai/
See More
Suggests RUnit, BiocGenerics, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me ATACCoGAPS
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneOverlap_1.39.0.tar.gz
Windows Binary GeneOverlap_1.39.0.zip (64-bit only)
macOS Binary (x86_64) GeneOverlap_1.39.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/GeneOverlap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneOverlap
Bioc Package Browser https://code.bioconductor.org/browse/GeneOverlap/
Package Short Url https://bioconductor.org/packages/GeneOverlap/
Package Downloads Report Download Stats