GOpro
This is the development version of GOpro; for the stable release version, see GOpro.
Find the most characteristic gene ontology terms for groups of human genes
Bioconductor version: Development (3.20)
Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).
Author: Lidia Chrabaszcz
Maintainer: Lidia Chrabaszcz <chrabaszcz.lidia at gmail.com>
citation("GOpro")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GOpro")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOpro")
GOpro: Determine groups of genes and find their characteristic GO term | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, Clustering, GO, GeneExpression, GeneSetEnrichment, MultipleComparison, Software |
Version | 1.31.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
License | GPL-3 |
Depends | R (>= 3.5.0) |
Imports | AnnotationDbi, dendextend, doParallel, foreach, parallel, org.Hs.eg.db, GO.db, Rcpp, stats, graphics, MultiAssayExperiment, IRanges, S4Vectors |
System Requirements | |
URL | https://github.com/mi2-warsaw/GOpro |
Bug Reports | https://github.com/mi2-warsaw/GOpro/issues |
See More
Suggests | knitr, rmarkdown, RTCGA.PANCAN12, BiocStyle, testthat |
Linking To | Rcpp, BH |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GOpro_1.31.0.tar.gz |
Windows Binary | GOpro_1.31.0.zip |
macOS Binary (x86_64) | GOpro_1.31.0.tgz |
macOS Binary (arm64) | GOpro_1.31.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GOpro |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOpro |
Bioc Package Browser | https://code.bioconductor.org/browse/GOpro/ |
Package Short Url | https://bioconductor.org/packages/GOpro/ |
Package Downloads Report | Download Stats |