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GA4GHclient

This is the development version of GA4GHclient; for the stable release version, see GA4GHclient.

A Bioconductor package for accessing GA4GH API data servers


Bioconductor version: Development (3.19)

GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.

Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb]

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("GA4GHclient")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GA4GHclient")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GA4GHclient")
GA4GHclient HTML R Script
Reference Manual PDF

Details

biocViews DataRepresentation, Software, ThirdPartyClient
Version 1.27.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL (>= 2)
Depends R (>= 3.5.0), S4Vectors
Imports BiocGenerics, Biostrings, dplyr, GenomeInfoDb, GenomicRanges, httr, IRanges, jsonlite, methods, VariantAnnotation
System Requirements
URL https://github.com/labbcb/GA4GHclient
Bug Reports https://github.com/labbcb/GA4GHclient/issues
See More
Suggests AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
Linking To
Enhances
Depends On Me GA4GHshiny
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GA4GHclient_1.27.0.tar.gz
Windows Binary
macOS Binary (x86_64) GA4GHclient_1.27.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/GA4GHclient
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GA4GHclient
Bioc Package Browser https://code.bioconductor.org/browse/GA4GHclient/
Package Short Url https://bioconductor.org/packages/GA4GHclient/
Package Downloads Report Download Stats