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This is the development version of ChIPComp; for the stable release version, see ChIPComp.

Quantitative comparison of multiple ChIP-seq datasets

Bioconductor version: Development (3.19)

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

Author: Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang

Maintainer: Li Chen <li.chen at>

Citation (from within R, enter citation("ChIPComp")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

ChIPComp PDF R Script
Reference Manual PDF


biocViews ChIPSeq, Coverage, DataImport, Genetics, MultipleComparison, Sequencing, Software, Transcription
Version 1.33.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL
Depends R (>= 3.2.0), GenomicRanges, IRanges, rtracklayer, GenomeInfoDb, S4Vectors
Imports Rsamtools, limma, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BiocGenerics
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Source Package ChIPComp_1.33.0.tar.gz
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macOS Binary (x86_64) ChIPComp_1.33.0.tgz
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