ASpli
This is the development version of ASpli; for the stable release version, see ASpli.
Analysis of Alternative Splicing Using RNA-Seq
Bioconductor version: Development (3.20)
Integrative pipeline for the analysis of alternative splicing using RNAseq.
Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz
Maintainer: Ariel Chernomoretz <algo107 at gmail.com>
Citation (from within R, enter
citation("ASpli")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ASpli")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ASpli")
ASpli | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription |
Version | 2.15.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
License | GPL |
Depends | methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi |
Imports | GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics, pbmcapply, txdbmaker |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | saseR |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ASpli_2.15.0.tar.gz |
Windows Binary | ASpli_2.15.0.zip |
macOS Binary (x86_64) | ASpli_2.15.0.tgz |
macOS Binary (arm64) | ASpli_2.15.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ASpli |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ASpli |
Bioc Package Browser | https://code.bioconductor.org/browse/ASpli/ |
Package Short Url | https://bioconductor.org/packages/ASpli/ |
Package Downloads Report | Download Stats |