Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-28 17:47 -0400 (Fri, 28 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4760 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4494 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4508 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4466 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4362 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2285/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
xcore 1.8.0 (landing page) Maciej MigdaĆ
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | NA | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
To the developers/maintainers of the xcore package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/xcore.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: xcore |
Version: 1.8.0 |
Command: chmod a+r xcore -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data xcore |
StartedAt: 2024-06-26 22:40:33 -0400 (Wed, 26 Jun 2024) |
EndedAt: 2024-06-26 22:42:29 -0400 (Wed, 26 Jun 2024) |
EllapsedTime: 116.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r xcore -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data xcore ### ############################################################################## ############################################################################## * checking for file 'xcore/DESCRIPTION' ... OK * preparing 'xcore': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'xcore_vignette.Rmd' using rmarkdown The magick package is required to crop "F:/biocbuild/bbs-3.19-bioc/tmpdir/RtmpKEkPfq/Rbuild62586f5e220b/xcore/vignettes/xcore_vignette_files/figure-html/unnamed-chunk-17-1.png" but not available. Quitting from lines 309-316 [unnamed-chunk-19] (xcore_vignette.Rmd) Error: processing vignette 'xcore_vignette.Rmd' failed with diagnostics: Corrupt Cache: index file See AnnotationHub's TroubleshootingTheHubs vignette section on corrupt cache cache: F:\biocbuild\AnnotationHub_cache filename: annotationhub.index.rds --- failed re-building 'xcore_vignette.Rmd' SUMMARY: processing the following file failed: 'xcore_vignette.Rmd' Error: Vignette re-building failed. Execution halted