Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-03-29 11:38:22 -0400 (Fri, 29 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4669 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4404 |
merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4427 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2190/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ttgsea 1.10.0 (landing page) Dongmin Jung
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the ttgsea package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ttgsea.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ttgsea |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ttgsea.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ttgsea_1.10.0.tar.gz |
StartedAt: 2024-03-28 10:15:36 -0400 (Thu, 28 Mar 2024) |
EndedAt: 2024-03-28 10:20:37 -0400 (Thu, 28 Mar 2024) |
EllapsedTime: 300.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ttgsea.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ttgsea.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ttgsea_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/ttgsea.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ttgsea/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ttgsea’ version ‘1.10.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ttgsea’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed fit_model 39.070 3.677 30.573 predict_model 38.554 3.915 28.300 bi_gru 16.879 2.676 23.063 token_vector 15.500 1.024 11.909 text_token 15.363 0.921 11.356 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ttgsea.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ttgsea ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘ttgsea’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ttgsea)
ttgsea.Rcheck/tests/testthat.Rout
R version 4.3.3 (2024-02-29) -- "Angel Food Cake" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ttgsea) Loading required package: keras > > test_check("ttgsea") 1/45 [..............................] - ETA: 7:40 - loss: 1.4063 - pearson_correlation: 0.0316 3/45 [=>............................] - ETA: 2s - loss: 1.7713 - pearson_correlation: -0.0044 4/45 [=>............................] - ETA: 2s - loss: 1.7819 - pearson_correlation: -0.0926 6/45 [===>..........................] - ETA: 1s - loss: 1.6573 - pearson_correlation: -0.1013 8/45 [====>.........................] - ETA: 1s - loss: 1.6575 - pearson_correlation: -0.0740 10/45 [=====>........................] - ETA: 1s - loss: 1.6065 - pearson_correlation: -0.0774 12/45 [=======>......................] - ETA: 1s - loss: 1.6131 - pearson_correlation: -0.0518 14/45 [========>.....................] - ETA: 1s - loss: 1.6105 - pearson_correlation: -0.0403 16/45 [=========>....................] - ETA: 1s - loss: 1.6065 - pearson_correlation: 0.0182 18/45 [===========>..................] - ETA: 1s - loss: 1.6383 - pearson_correlation: 0.0248 19/45 [===========>..................] - ETA: 1s - loss: 1.6260 - pearson_correlation: 0.0433 21/45 [=============>................] - ETA: 0s - loss: 1.6113 - pearson_correlation: 0.0313 23/45 [==============>...............] - ETA: 0s - loss: 1.6268 - pearson_correlation: 0.0509 25/45 [===============>..............] - ETA: 0s - loss: 1.6252 - pearson_correlation: 0.0690 27/45 [=================>............] - ETA: 0s - loss: 1.6292 - pearson_correlation: 0.0650 29/45 [==================>...........] - ETA: 0s - loss: 1.6343 - pearson_correlation: 0.0662 31/45 [===================>..........] - ETA: 0s - loss: 1.6367 - pearson_correlation: 0.0696 33/45 [=====================>........] - ETA: 0s - loss: 1.6073 - pearson_correlation: 0.0802 35/45 [======================>.......] - ETA: 0s - loss: 1.6030 - pearson_correlation: 0.0802 37/45 [=======================>......] - ETA: 0s - loss: 1.5974 - pearson_correlation: 0.0905 39/45 [=========================>....] - ETA: 0s - loss: 1.5860 - pearson_correlation: 0.0873 41/45 [==========================>...] - ETA: 0s - loss: 1.5726 - pearson_correlation: 0.0815 43/45 [===========================>..] - ETA: 0s - loss: 1.5649 - pearson_correlation: 0.0904 45/45 [==============================] - ETA: 0s - loss: 1.5607 - pearson_correlation: 0.0917 45/45 [==============================] - 12s 39ms/step - loss: 1.5607 - pearson_correlation: 0.0917 1/4 [======>.......................] - ETA: 3s 4/4 [==============================] - 1s 10ms/step 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 0s 52ms/step 1/32 [..............................] - ETA: 1s 6/32 [====>.........................] - ETA: 0s 12/32 [==========>...................] - ETA: 0s 18/32 [===============>..............] - ETA: 0s 24/32 [=====================>........] - ETA: 0s 30/32 [===========================>..] - ETA: 0s 32/32 [==============================] - 0s 9ms/step 1/32 [..............................] - ETA: 1s 7/32 [=====>........................] - ETA: 0s 13/32 [===========>..................] - ETA: 0s 19/32 [================>.............] - ETA: 0s 25/32 [======================>.......] - ETA: 0s 31/32 [============================>.] - ETA: 0s 32/32 [==============================] - 0s 9ms/step 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 0s 52ms/step 1/32 [..............................] - ETA: 1s 7/32 [=====>........................] - ETA: 0s 13/32 [===========>..................] - ETA: 0s 19/32 [================>.............] - ETA: 0s 25/32 [======================>.......] - ETA: 0s 31/32 [============================>.] - ETA: 0s 32/32 [==============================] - 0s 9ms/step 1/32 [..............................] - ETA: 1s 6/32 [====>.........................] - ETA: 0s 12/32 [==========>...................] - ETA: 0s 18/32 [===============>..............] - ETA: 0s 24/32 [=====================>........] - ETA: 0s 30/32 [===========================>..] - ETA: 0s 32/32 [==============================] - 0s 9ms/step 1/32 [..............................] - ETA: 1s 7/32 [=====>........................] - ETA: 0s 13/32 [===========>..................] - ETA: 0s 19/32 [================>.............] - ETA: 0s 25/32 [======================>.......] - ETA: 0s 31/32 [============================>.] - ETA: 0s 32/32 [==============================] - 0s 9ms/step 1/32 [..............................] - ETA: 1s 6/32 [====>.........................] - ETA: 0s 12/32 [==========>...................] - ETA: 0s 18/32 [===============>..............] - ETA: 0s 24/32 [=====================>........] - ETA: 0s 29/32 [==========================>...] - ETA: 0s 32/32 [==============================] - 0s 10ms/step [ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ] > > proc.time() user system elapsed 55.967 7.269 56.592
ttgsea.Rcheck/ttgsea-Ex.timings
name | user | system | elapsed | |
bi_gru | 16.879 | 2.676 | 23.063 | |
bi_lstm | 0.570 | 0.039 | 0.615 | |
fit_model | 39.070 | 3.677 | 30.573 | |
metric_pearson_correlation | 0.022 | 0.002 | 0.024 | |
plot_model | 0.500 | 0.049 | 0.567 | |
predict_model | 38.554 | 3.915 | 28.300 | |
sampling_generator | 0.000 | 0.000 | 0.001 | |
text_token | 15.363 | 0.921 | 11.356 | |
token_vector | 15.500 | 1.024 | 11.909 | |