Wolfgang Kaisers
| Snapshot Date: 2024-05-16 14:00:15 -0400 (Thu, 16 May 2024) |
| git_url: https://git.bioconductor.org/packages/seqTools |
| git_branch: RELEASE_3_19 |
| git_last_commit: 1de1371 |
| git_last_commit_date: 2024-04-30 10:40:35 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-17 11:37:26 -0400 (Fri, 17 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4751 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4485 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4515 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1950/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| seqTools 1.38.0 (landing page) Wolfgang Kaisers
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the seqTools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/seqTools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: seqTools |
| Version: 1.38.0 |
| Command: rm -rf seqTools.buildbin-libdir && mkdir seqTools.buildbin-libdir && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=seqTools.buildbin-libdir seqTools_1.38.0.tar.gz |
| StartedAt: 2024-05-17 09:24:55 -0400 (Fri, 17 May 2024) |
| EndedAt: 2024-05-17 09:25:16 -0400 (Fri, 17 May 2024) |
| EllapsedTime: 20.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: seqTools_1.38.0.zip |
| PackageFileSize: 654.3 KiB |
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### Running command:
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### rm -rf seqTools.buildbin-libdir && mkdir seqTools.buildbin-libdir && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=seqTools.buildbin-libdir seqTools_1.38.0.tar.gz
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* installing *source* package 'seqTools' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc -I"F:/biocbuild/bbs-3.19-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.19-bioc/R/library/zlibbioc/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c seqTools.c -o seqTools.o
seqTools.c: In function 'count_genome_Kmers':
seqTools.c:851:93: warning: format '%u' expects a matching 'unsigned int' argument [-Wformat=]
851 | error("[count_genome_Kmers] character mismatch at position %u!");
| ~^
| |
| unsigned int
seqTools.c: In function 'scale_kmer_matrix':
seqTools.c:3296:55: warning: format '%i' expects argument of type 'int', but argument 3 has type 'double' [-Wformat=]
3296 | error("[scale_kmer_matrix] scale[%i]=%i must be >1!", column_index, scale);
| ~^ ~~~~~
| | |
| int double
| %f
seqTools.c:3306:73: warning: format '%i' expects argument of type 'int', but argument 3 has type 'double' [-Wformat=]
3306 | error("[scale_kmer_matrix] scale[%i] = %i must be >1!", column_index, scale);
| ~^ ~~~~~
| | |
| int double
| %f
gcc -shared -s -static-libgcc -o seqTools.dll tmp.def seqTools.o -lm -LF:/biocbuild/bbs-3.19-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/meat/seqTools.buildbin-libdir/00LOCK-seqTools/00new/seqTools/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'seqTools' as seqTools_1.38.0.zip
* DONE (seqTools)