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This page was generated on 2024-06-18 17:59 -0400 (Tue, 18 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4758
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4492
merida1macOS 12.7.4 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4464
kjohnson1macOS 13.6.6 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1762/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rhdf5filters 1.16.0  (landing page)
Mike Smith
Snapshot Date: 2024-06-16 14:00 -0400 (Sun, 16 Jun 2024)
git_url: https://git.bioconductor.org/packages/rhdf5filters
git_branch: RELEASE_3_19
git_last_commit: 1d29c0e
git_last_commit_date: 2024-04-30 11:21:38 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


BUILD BIN results for rhdf5filters on palomino3

To the developers/maintainers of the rhdf5filters package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5filters.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: rhdf5filters
Version: 1.16.0
Command: rm -rf rhdf5filters.buildbin-libdir && mkdir rhdf5filters.buildbin-libdir && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5filters.buildbin-libdir rhdf5filters_1.16.0.tar.gz
StartedAt: 2024-06-17 17:33:12 -0400 (Mon, 17 Jun 2024)
EndedAt: 2024-06-17 17:39:16 -0400 (Mon, 17 Jun 2024)
EllapsedTime: 364.1 seconds
RetCode: 0
Status:   OK  
PackageFile: rhdf5filters_1.16.0.zip
PackageFileSize: 2.231 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf rhdf5filters.buildbin-libdir && mkdir rhdf5filters.buildbin-libdir && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5filters.buildbin-libdir rhdf5filters_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'rhdf5filters' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
make -C zstd
make[1]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/zstd'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_ldm.c -o compress/zstd_ldm.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_opt.c -o compress/zstd_opt.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/huf_decompress.c -o decompress/huf_decompress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o
rm -f libzstd.a
ar cq libzstd.a common/debug.o common/entropy_common.o common/error_private.o common/fse_decompress.o common/pool.o common/threading.o common/xxhash.o common/zstd_common.o compress/fse_compress.o compress/hist.o compress/huf_compress.o compress/zstd_compress.o compress/zstd_compress_literals.o compress/zstd_compress_sequences.o compress/zstd_compress_superblock.o compress/zstd_double_fast.o compress/zstd_fast.o compress/zstd_lazy.o compress/zstd_ldm.o compress/zstd_opt.o compress/zstdmt_compress.o decompress/huf_decompress.o decompress/zstd_ddict.o decompress/zstd_decompress.o decompress/zstd_decompress_block.o
ranlib libzstd.a
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -shared H5Zzstd.c -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" \
-I. -Icommon libzstd.a  -o libH5Zzstd.so
make[1]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/zstd'
make -C blosc
make[1]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/blosc'
make -C lib/snappy-1.1.1
make[2]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/blosc/lib/snappy-1.1.1'
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -c snappy.cc
snappy.cc: In member function 'bool snappy::SnappyIOVecWriter::Append(const char*, size_t)':
snappy.cc:1013:33: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare]
 1013 |         if (curr_iov_index_ + 1 >= output_iov_count_) {
      |             ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
snappy.cc: In member function 'bool snappy::SnappyIOVecWriter::AppendFromSelf(size_t, size_t)':
snappy.cc:1095:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare]
 1095 |           if (curr_iov_index_ + 1 >= output_iov_count_) {
      |               ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
snappy.cc: At global scope:
snappy.cc:567:13: warning: 'void snappy::ComputeTable()' defined but not used [-Wunused-function]
  567 | static void ComputeTable() {
      |             ^~~~~~~~~~~~
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -c snappy-c.cc
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -c snappy-sinksource.cc
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -c snappy-stubs-internal.cc
make[2]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/blosc/lib/snappy-1.1.1'
make -C lib/lz4-1.9.4
make[2]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/blosc/lib/lz4-1.9.4'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -c lz4.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -c lz4hc.c
make[2]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/blosc/lib/lz4-1.9.4'
make -C lib/blosc-1.20.1 all
make[2]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/blosc/lib/blosc-1.20.1'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c bitshuffle-generic.c
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_remainder':
bitshuffle-generic.c:40:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   40 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_scal':
bitshuffle-generic.c:48:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   48 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_byte_remainder':
bitshuffle-generic.c:85:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   85 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_elem':
bitshuffle-generic.c:109:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  109 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bitrow_eight':
bitshuffle-generic.c:121:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  121 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_elem_scal':
bitshuffle-generic.c:139:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  139 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_shuffle_bit_eightelem_scal':
bitshuffle-generic.c:204:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  204 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_untrans_bit_elem_scal':
bitshuffle-generic.c:220:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  220 | }
      | ^
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c shuffle-generic.c
shuffle-generic.c: In function 'blosc_internal_shuffle_generic':
shuffle-generic.c:17:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   17 | }
      | ^
shuffle-generic.c: In function 'blosc_internal_unshuffle_generic':
shuffle-generic.c:25:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   25 | }
      | ^
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd     -c shuffle.c
shuffle.c: In function 'get_shuffle_implementation':
shuffle.c:316:22: warning: unused variable 'cpu_features' [-Wunused-variable]
  316 |   blosc_cpu_features cpu_features = blosc_get_cpu_features();
      |                      ^~~~~~~~~~~~
In file included from shuffle.c:12:
shuffle-generic.h: At top level:
shuffle-generic.h:61:13: warning: 'unshuffle_generic_inline' defined but not used [-Wunused-function]
   61 | static void unshuffle_generic_inline(const size_t type_size,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
shuffle-generic.h:32:13: warning: 'shuffle_generic_inline' defined but not used [-Wunused-function]
   32 | static void shuffle_generic_inline(const size_t type_size,
      |             ^~~~~~~~~~~~~~~~~~~~~~
shuffle.c: In function 'blosc_internal_shuffle':
shuffle.c:390:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  390 | }
      | ^
shuffle.c: In function 'blosc_internal_unshuffle':
shuffle.c:403:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  403 | }
      | ^
shuffle.c: In function 'blosc_internal_bitshuffle':
shuffle.c:430:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  430 | }
      | ^
shuffle.c: In function 'blosc_internal_bitunshuffle':
shuffle.c:457:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  457 | }
      | ^
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c blosclz.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c blosc.c
blosc.c:151:16: warning: 'g_atfork_registered' defined but not used [-Wunused-variable]
  151 | static int32_t g_atfork_registered = 0;
      |                ^~~~~~~~~~~~~~~~~~~
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c fastcopy.c
make[2]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/blosc/lib/blosc-1.20.1'
rm -f libblosc.a
ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.4/lz4.o lib/lz4-1.9.4/lz4hc.o 
ranlib libblosc.a
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -shared -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" H5Zblosc.cpp \
 -I./lib/blosc-1.20.1 ./libblosc.a ../zstd/libzstd.a -lz -o libH5Zblosc.so 
make[1]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/blosc'
make -C bzip2
make[1]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/bzip2'
make -C bzip2-1.0.8
make[2]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/bzip2/bzip2-1.0.8'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c blocksort.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c huffman.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c crctable.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c randtable.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c compress.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c decompress.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c bzlib.c
rm -f libbz2.a
ar cq libbz2.a blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o
make[2]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/bzip2/bzip2-1.0.8'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -shared H5Zbzip2.c -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" \
-Ibzip2-1.0.8 bzip2-1.0.8/libbz2.a  -o libH5Zbz2.so
make[1]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/bzip2'
make -C lzf
make[1]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/lzf'
make -C lzf
make[2]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/lzf/lzf'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -c lzf_c.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -c lzf_d.c
rm -f liblzf.a
ar cq liblzf.a lzf_c.o lzf_d.o
ranlib liblzf.a
make[2]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/lzf/lzf'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -shared H5Zlzf.c -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" \
-I./lzf/ ./lzf/liblzf.a  -o libH5Zlzf.so
make[1]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/lzf'
make -C vbz
make[1]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/vbz'
make -C third_party/streamvbyte
make[2]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/vbz/third_party/streamvbyte'
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbyte_decode.c
In file included from ./src/streamvbyte_decode.c:25:
./src/streamvbyte_shuffle_tables_decode.h:22:16: warning: 'shuffleTable' defined but not used [-Wunused-variable]
   22 | static uint8_t shuffleTable[256][16] = {
      |                ^~~~~~~~~~~~
./src/streamvbyte_shuffle_tables_decode.h:2:16: warning: 'lengthTable' defined but not used [-Wunused-variable]
    2 | static uint8_t lengthTable[256] ={
      |                ^~~~~~~~~~~
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbyte_encode.c
In file included from ./src/streamvbyte_encode.c:25:
./src/streamvbyte_shuffle_tables_encode.h:93:16: warning: 'encodingShuffleTable' defined but not used [-Wunused-variable]
   93 | static uint8_t encodingShuffleTable[256][16] = {
      |                ^~~~~~~~~~~~~~~~~~~~
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbytedelta_decode.c
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbytedelta_encode.c
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbyte_0124_encode.c
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbyte_0124_decode.c
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbyte_zigzag.c
rm -f libstreamvbyte.a
ar cq libstreamvbyte.a streamvbyte_decode.o streamvbyte_encode.o streamvbytedelta_decode.o streamvbytedelta_encode.o streamvbyte_0124_encode.o  streamvbyte_0124_decode.o streamvbyte_zigzag.o
ranlib libstreamvbyte.a 
make[2]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/vbz/third_party/streamvbyte'
make -C vbz
make[2]: Entering directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/vbz/vbz'
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c vbz.cpp -o vbz.o
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c v0/vbz_streamvbyte.cpp -o v0/vbz_streamvbyte.o
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c v1/vbz_streamvbyte.cpp -o v1/vbz_streamvbyte.o
make[2]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/vbz/vbz'
rm -f libvbz.a
ar cq libvbz.a vbz/vbz.o vbz/v0/vbz_streamvbyte.o vbz/v1/vbz_streamvbyte.o
ranlib libvbz.a
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -shared vbz_plugin.cpp \
libvbz.a  ../zstd/libzstd.a third_party/streamvbyte/libstreamvbyte.a -o libH5Zvbz.so
make[1]: Leaving directory '/f/biocbuild/bbs-3.19-bioc/tmpdir/RtmpOoiFUI/R.INSTALL95d471b73609/rhdf5filters/src/vbz'
mkdir -p "F:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64/"
cp blosc/libH5Zblosc.so "F:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zblosc.dll"
cp bzip2/libH5Zbz2.so "F:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zbz2.dll"
cp lzf/libH5Zlzf.so "F:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zlzf.dll"
cp vbz/libH5Zvbz.so "F:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zvbz.dll"
cp zstd/libH5Zzstd.so "F:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zzstd.dll"
gcc  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -lpthread -I"F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rhdf5filters.c -o rhdf5filters.o
gcc -shared -s -static-libgcc -o rhdf5filters.dll tmp.def rhdf5filters.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'rhdf5filters' as rhdf5filters_1.16.0.zip
* DONE (rhdf5filters)