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This page was generated on 2024-03-04 11:37:36 -0500 (Mon, 04 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4692
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4445
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4466
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1373/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
muscat 1.16.0  (landing page)
Helena L. Crowell
Snapshot Date: 2024-03-03 14:05:05 -0500 (Sun, 03 Mar 2024)
git_url: https://git.bioconductor.org/packages/muscat
git_branch: RELEASE_3_18
git_last_commit: 448b1e8
git_last_commit_date: 2023-10-24 11:16:01 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for muscat on lconway


To the developers/maintainers of the muscat package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/muscat.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: muscat
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data muscat
StartedAt: 2024-03-03 17:32:58 -0500 (Sun, 03 Mar 2024)
EndedAt: 2024-03-03 17:36:19 -0500 (Sun, 03 Mar 2024)
EllapsedTime: 201.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data muscat
###
##############################################################################
##############################################################################


* checking for file ‘muscat/DESCRIPTION’ ... OK
* preparing ‘muscat’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘analysis.Rmd’ using rmarkdown

Quitting from lines 119-122 [fil] (analysis.Rmd)
Error: processing vignette 'analysis.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'rowSums': unable to find an inherited method for function 'counts' for signature '"tbl_df"'
--- failed re-building ‘analysis.Rmd’

--- re-building ‘simulation.Rmd’ using rmarkdown
pandoc-citeproc: reference Crowell2019-muscat not found
pandoc-citeproc: reference Crowell2019-muscat not found
--- finished re-building ‘simulation.Rmd’

SUMMARY: processing the following file failed:
  ‘analysis.Rmd’

Error: Vignette re-building failed.
Execution halted