Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-06-24 12:07:24 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4156
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4221
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for epimutacions on merida1


To the developers/maintainers of the epimutacions package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epimutacions.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 612/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
epimutacions 1.0.3  (landing page)
Leire Abarrategui
Snapshot Date: 2022-06-23 13:55:15 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/epimutacions
git_branch: RELEASE_3_15
git_last_commit: 546eb34
git_last_commit_date: 2022-06-20 15:59:10 -0400 (Mon, 20 Jun 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: epimutacions
Version: 1.0.3
Command: rm -rf epimutacions.buildbin-libdir && mkdir epimutacions.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh epimutacions_1.0.3.tar.gz /Library/Frameworks/R.framework/Resources/bin/R epimutacions.buildbin-libdir
StartedAt: 2022-06-24 11:23:38 -0400 (Fri, 24 Jun 2022)
EndedAt: 2022-06-24 11:25:11 -0400 (Fri, 24 Jun 2022)
EllapsedTime: 93.3 seconds
RetCode: 0
Status:   OK  
PackageFile: epimutacions_1.0.3.tgz
PackageFileSize: 1.459 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf epimutacions.buildbin-libdir && mkdir epimutacions.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh epimutacions_1.0.3.tar.gz /Library/Frameworks/R.framework/Resources/bin/R epimutacions.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=epimutacions.buildbin-libdir epimutacions_1.0.3.tar.gz'
>>>>>>> 

* installing *source* package ‘epimutacions’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c mlm_init.c -o mlm_init.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ruben.cpp -o ruben.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o epimutacions.so mlm_init.o ruben.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.15-bioc/meat/epimutacions.buildbin-libdir/00LOCK-epimutacions/00new/epimutacions/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (epimutacions)


>>>>>>> 
>>>>>>> FIXING LINKS FOR epimutacions.buildbin-libdir/epimutacions/libs/epimutacions.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "epimutacions.buildbin-libdir/epimutacions/libs/epimutacions.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "epimutacions.buildbin-libdir/epimutacions/libs/epimutacions.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "epimutacions.buildbin-libdir/epimutacions/libs/epimutacions.so"