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This page was generated on 2023-09-23 11:35:42 -0400 (Sat, 23 Sep 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4625
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4378
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 566/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
distinct 1.12.2  (landing page)
Simone Tiberi
Snapshot Date: 2023-09-22 14:00:14 -0400 (Fri, 22 Sep 2023)
git_url: https://git.bioconductor.org/packages/distinct
git_branch: RELEASE_3_17
git_last_commit: 3f26450
git_last_commit_date: 2023-05-15 05:46:56 -0400 (Mon, 15 May 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

BUILD BIN results for distinct on palomino3


To the developers/maintainers of the distinct package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/distinct.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: distinct
Version: 1.12.2
Command: rm -rf distinct.buildbin-libdir && mkdir distinct.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=distinct.buildbin-libdir distinct_1.12.2.tar.gz
StartedAt: 2023-09-23 08:51:01 -0400 (Sat, 23 Sep 2023)
EndedAt: 2023-09-23 08:52:40 -0400 (Sat, 23 Sep 2023)
EllapsedTime: 98.8 seconds
RetCode: 0
Status:   OK  
PackageFile: distinct_1.12.2.zip
PackageFileSize: 1.969 MiB

Command output

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###
### Running command:
###
###   rm -rf distinct.buildbin-libdir && mkdir distinct.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=distinct.buildbin-libdir distinct_1.12.2.tar.gz
###
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* installing *source* package 'distinct' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Perm.cpp -o Perm.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Perm_covariates.cpp -o Perm_covariates.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:16,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast.h:5,
                 from Perm_covariates.cpp:2:
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:19: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
   19 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:92: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
   92 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:105: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  105 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:157: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  157 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:164: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  164 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:175: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  175 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:182: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  182 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:193: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  193 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:200: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  200 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:211: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  211 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:218: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  218 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:228: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  228 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:456: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  456 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:939: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  939 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:944: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  944 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:973: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  973 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:978: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  978 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1006: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1006 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1011: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1011 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1394: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1394 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1416: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1416 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1421: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1421 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1498: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1498 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1520: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1520 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1525: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1525 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1556: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1556 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1579: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1579 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1600: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1600 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1621: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1621 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1762: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1762 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1823: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1823 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1884: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1884 | #pragma omp critical
      | 
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:15:
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/types.hpp:42:17: warning: inline variables are only available with '-std=c++17' or '-std=gnu++17' [-Wc++17-extensions]
   42 |                 inline static type val;
      |                 ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/types.hpp:47:17: warning: inline variables are only available with '-std=c++17' or '-std=gnu++17' [-Wc++17-extensions]
   47 |                 inline static type val= NA_INTEGER;
      |                 ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/types.hpp:52:17: warning: inline variables are only available with '-std=c++17' or '-std=gnu++17' [-Wc++17-extensions]
   52 |                 inline static type val= NA_LOGICAL;
      |                 ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/types.hpp:57:17: warning: inline variables are only available with '-std=c++17' or '-std=gnu++17' [-Wc++17-extensions]
   57 |                 inline static type val= NA_REAL;
      |                 ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/types.hpp:62:17: warning: inline variables are only available with '-std=c++17' or '-std=gnu++17' [-Wc++17-extensions]
   62 |                 inline static type val = NA_STRING;
      |                 ^~~~~~
Perm_covariates.cpp: In function 'arma::vec my_rint_reg(const arma::mat&, const arma::vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)':
Perm_covariates.cpp:189:16: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  189 |   for(int i=0;i<p;i++)
      |               ~^~
Perm_covariates.cpp:210:12: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  210 |   while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
      |         ~~~^~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Perm_covariates_parallel.cpp -o Perm_covariates_parallel.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:16,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast.h:5,
                 from Perm_covariates_parallel.cpp:2:
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:19: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
   19 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:92: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
   92 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:105: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  105 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:157: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  157 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:164: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  164 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:175: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  175 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:182: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  182 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:193: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  193 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:200: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  200 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:211: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  211 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:218: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  218 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:228: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  228 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/helpers.hpp:456: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  456 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:939: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  939 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:944: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  944 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:973: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  973 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:978: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  978 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1006: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1006 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1011: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1011 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1394: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1394 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1416: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1416 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1421: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1421 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1498: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1498 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1520: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1520 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1525: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1525 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1556: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1556 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1579: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1579 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1600: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1600 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1621: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1621 | #pragma omp parallel for
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1762: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1762 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1823: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1823 | #pragma omp critical
      | 
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:1884: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
 1884 | #pragma omp critical
      | 
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:15:
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/types.hpp:42:17: warning: inline variables are only available with '-std=c++17' or '-std=gnu++17' [-Wc++17-extensions]
   42 |                 inline static type val;
      |                 ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/types.hpp:47:17: warning: inline variables are only available with '-std=c++17' or '-std=gnu++17' [-Wc++17-extensions]
   47 |                 inline static type val= NA_INTEGER;
      |                 ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/types.hpp:52:17: warning: inline variables are only available with '-std=c++17' or '-std=gnu++17' [-Wc++17-extensions]
   52 |                 inline static type val= NA_LOGICAL;
      |                 ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/types.hpp:57:17: warning: inline variables are only available with '-std=c++17' or '-std=gnu++17' [-Wc++17-extensions]
   57 |                 inline static type val= NA_REAL;
      |                 ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/types.hpp:62:17: warning: inline variables are only available with '-std=c++17' or '-std=gnu++17' [-Wc++17-extensions]
   62 |                 inline static type val = NA_STRING;
      |                 ^~~~~~
Perm_covariates_parallel.cpp: In function 'arma::vec my_rint_reg_parallel(const arma::mat&, const arma::vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)':
Perm_covariates_parallel.cpp:189:16: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  189 |   for(int i=0;i<p;i++)
      |               ~^~
Perm_covariates_parallel.cpp:210:12: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  210 |   while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
      |         ~~~^~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Perm_parallel.cpp -o Perm_parallel.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -shared -s -static-libgcc -o distinct.dll tmp.def Perm.o Perm_covariates.o Perm_covariates_parallel.o Perm_parallel.o RcppExports.o -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/meat/distinct.buildbin-libdir/00LOCK-distinct/00new/distinct/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'distinct' as distinct_1.12.2.zip
* DONE (distinct)