Mustafa Erhan Özer
| Snapshot Date: 2023-09-22 14:00:14 -0400 (Fri, 22 Sep 2023) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_17 |
| git_last_commit: 39afc67 |
| git_last_commit_date: 2023-04-25 11:44:47 -0400 (Tue, 25 Apr 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-09-23 11:36:19 -0400 (Sat, 23 Sep 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4625 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4378 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4394 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2050/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.0.0 (landing page) Mustafa Erhan Özer
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | NA | |||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.0.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings SVMDO_1.0.0.tar.gz |
| StartedAt: 2023-09-23 07:36:47 -0400 (Sat, 23 Sep 2023) |
| EndedAt: 2023-09-23 07:40:41 -0400 (Sat, 23 Sep 2023) |
| EllapsedTime: 233.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings SVMDO_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/SVMDO.Rcheck'
* using R version 4.3.1 (2023-06-16 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 12.2.0
GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 5367,3815,3586,114548,7376,23038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9414,8517,2787,353500,6616,201595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83985,5331,3315,3687,80854,406922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6519,388372,5968,8665,1351,3556
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5274,221895,64772,361,9475,63874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3760,7289,6615,231,6248,100126861
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9122,10116,3375,5105,5054,5581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5968,100303755,6311,81034,790955,8517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54896,4337,55748,4149,5288,6906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3382,2690,3670,1435,3778,2767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5723,54805,80724,406938,2701,3654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50814,6464,5631,29947,114548,27445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 648998,57264,2885,23365,10316,652
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7852,5365,9722,2587,5802,4878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5499,3551,7031,6301,8803,10682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55670,123263,201305,5368,5625,4688
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55065,6275,3934,2064,5345,54476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 652,4118,4321,6448,4478,2181
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3316,79071,9131,3688,8050,10730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79053,10229,2055,140803,685,105372280
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6564,5188,6288,7284,336,5950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23474,56244,2593,84557,5507,5091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6722,130589,5191,3425,3145,65080
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 104,3485,10457,339,6602,201595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 265,3930,1471,3663,8473,3303
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 432369,10886,22868,3458,708,3312
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406991,102,54577,54210,3416,2820
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3759,15,54796,3938,1232,55644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 353,2135,1345,920,2710,347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9968,60412,27097,509,1786,3802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1608,6387,8609,1050,56052,11093
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1584,53632,407007,4544,2731,493927
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57511,90865,2524,5830,79071,4285
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55065,116931,1992,10352,2034,6554
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5506,3507,26517,2115,2180,2805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7032,3703,1678,9370,10935,100128525
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 211,5970,6476,1544,6752,10000
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6901,104,9507,6256,284184,6311
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4221,7466,364,5286,10423,6383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6908,1815,5078,3082,23082,81689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64919,84317,3570,153,2908,7879
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 37,51300,155,54575,5243,407004
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55149,4880,2693,5979,200186,4709
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 145258,9868,116085,4536,3574,6748
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2006,3651,51293,355,6786,940
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6530,112817,6258,5625,4846,6272
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6932,5027,585,635,2052,3065
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5771,55005,9512,5306,2641,3811
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2587,6564,6898,54796,54578,1593
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7220,25813,728441,2030,23038,54210
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5662,3485,2026,2247,8764,5631
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4247,54205,6414,359,5409,3066
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10135,10243,55970,65993,2806,35
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2834,131118,7276,4773,3939,57505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5228,4502,3556,2791,85569,115286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,265,147007,5551,4153,114899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6928,6571,8665,3416,5092,6288
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6311,1364,4508,6929,3593,133396
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56652,84947,213,116931,844,5538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,6948,3065,51141,246,3383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5023,3284,6337,23291,5788,64919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2645,9997,685,1051,84987,8740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6007,353500,10295,406,5194,655
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1573,3875,2701,136259,3156,6531
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51116,3654,4311,6311,51441,4580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7274,55863,729238,5629,5286,5798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406906,3990,57511,9314,160428,50615
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7486,3309,8841,101180976,6414,409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3593,3762,51119,10886,84868,5078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5891,3813,10616,4669,10991,145741
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 38,4758,60528,3673,3709,3170
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9498,54210,3687,116228,387,50674
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8462,10000,841,407021,5368,5824
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1329,79133,65985,1646,5743,10229
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23753,54331,801,1468,2115,4671
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3242,9241,55748,83440,80339,80270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 665,3060,23236,5788,15,2328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6794,270,124454,81689,2099,7167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9997,6928,1650,64772,11254,23118
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
21.03 0.96 22.29
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.14 | 0.00 | 1.19 | |