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This page was generated on 2024-06-18 17:59 -0400 (Tue, 18 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4758
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4492
merida1macOS 12.7.4 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4464
kjohnson1macOS 13.6.6 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1763/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rhdf5lib 1.26.0  (landing page)
Mike Smith
Snapshot Date: 2024-06-16 14:00 -0400 (Sun, 16 Jun 2024)
git_url: https://git.bioconductor.org/packages/Rhdf5lib
git_branch: RELEASE_3_19
git_last_commit: 9755392
git_last_commit_date: 2024-04-30 10:58:46 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published


INSTALL results for Rhdf5lib on palomino3

To the developers/maintainers of the Rhdf5lib package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rhdf5lib.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rhdf5lib
Version: 1.26.0
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib
StartedAt: 2024-06-16 15:36:21 -0400 (Sun, 16 Jun 2024)
EndedAt: 2024-06-16 15:36:47 -0400 (Sun, 16 Jun 2024)
EllapsedTime: 25.5 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib
###
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* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'Rhdf5lib' ...
** using staged installation
untarring hdf5_headers_1.10.7.tar.gz ...
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
mkdir -p "F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt" "F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
"F:/biocbuild/bbs-3.19-bioc/R/bin/x64/Rscript.exe" "../tools/copy_hdf5_files.R" "F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt" "F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
Copying libraries
Copying headers
Done
"F:/biocbuild/bbs-3.19-bioc/R/bin/x64/Rscript.exe" "../tools/winlibs.R" "F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt"
Copying libcurl etc
gcc  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I"F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rhdf5lib.c -o Rhdf5lib.o
gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt/libhdf5.a F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt/libsz.a F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt/libaec.a -lpsapi -lz -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rhdf5lib)