Multiple platform build/check report for BioC 3.18 - BUILD results for CoGAPS on palomino4

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.3.3 (2024-02-29) -- "Angel Food Cake"	4669
palomino4	Windows Server 2022 Datacenter	x64	4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake"	4404
merida1	macOS 12.7.1 Monterey	x86_64	4.3.3 (2024-02-29) -- "Angel Food Cake"	4427
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the CoGAPS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoGAPS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r CoGAPS -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CoGAPS
###
##############################################################################
##############################################################################


* checking for file 'CoGAPS/DESCRIPTION' ... OK
* preparing 'CoGAPS':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CoGAPS.Rmd' using rmarkdown
Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
10000 of 50000, Atoms: 65(A), 30(P), ChiSq: 410, Time: 00:00:00 / 00:00:00
20000 of 50000, Atoms: 77(A), 45(P), ChiSq: 146, Time: 00:00:00 / 00:00:00
30000 of 50000, Atoms: 73(A), 44(P), ChiSq: 116, Time: 00:00:00 / 00:00:00
40000 of 50000, Atoms: 77(A), 43(P), ChiSq: 109, Time: 00:00:01 / 00:00:02
50000 of 50000, Atoms: 88(A), 42(P), ChiSq: 129, Time: 00:00:01 / 00:00:02
-- Sampling Phase --
10000 of 50000, Atoms: 81(A), 39(P), ChiSq: 109, Time: 00:00:02 / 00:00:03
20000 of 50000, Atoms: 83(A), 39(P), ChiSq: 148, Time: 00:00:02 / 00:00:02
30000 of 50000, Atoms: 68(A), 44(P), ChiSq: 107, Time: 00:00:02 / 00:00:02
40000 of 50000, Atoms: 73(A), 39(P), ChiSq: 130, Time: 00:00:03 / 00:00:03
50000 of 50000, Atoms: 75(A), 40(P), ChiSq: 121, Time: 00:00:03 / 00:00:03
trying URL 'https://zenodo.org/record/7709664/files/inputdata.Rds'
Content type 'application/octet-stream' length 433262849 bytes (413.2 MB)
==================================================
downloaded 413.2 MB

trying URL 'https://zenodo.org/record/7709664/files/cogapsresult.Rds?download=1'
Content type 'application/octet-stream' length 44220317 bytes (42.2 MB)
==================================================
downloaded 42.2 MB


Quitting from lines 427-428 [unnamed-chunk-6] (CoGAPS.Rmd)
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
Unable to query any Ensembl site
--- failed re-building 'CoGAPS.Rmd'

SUMMARY: processing the following file failed:
  'CoGAPS.Rmd'

Error: Vignette re-building failed.
Execution halted

BUILD results for CoGAPS on palomino4

Summary

Command output