This page was generated on 2024-03-29 11:37:37 -0400 (Fri, 29 Mar 2024).
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
###
##############################################################################
##############################################################################
* checking for file ‘CoGAPS/DESCRIPTION’ ... OK
* preparing ‘CoGAPS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CoGAPS.Rmd’ using rmarkdown
Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
10000 of 50000, Atoms: 56(A), 45(P), ChiSq: 359, Time: 00:00:00 / 00:00:00
20000 of 50000, Atoms: 59(A), 45(P), ChiSq: 178, Time: 00:00:01 / 00:00:05
30000 of 50000, Atoms: 70(A), 47(P), ChiSq: 120, Time: 00:00:01 / 00:00:03
40000 of 50000, Atoms: 63(A), 56(P), ChiSq: 142, Time: 00:00:02 / 00:00:05
50000 of 50000, Atoms: 68(A), 48(P), ChiSq: 102, Time: 00:00:02 / 00:00:04
-- Sampling Phase --
10000 of 50000, Atoms: 68(A), 52(P), ChiSq: 122, Time: 00:00:03 / 00:00:05
20000 of 50000, Atoms: 65(A), 53(P), ChiSq: 131, Time: 00:00:04 / 00:00:05
30000 of 50000, Atoms: 65(A), 44(P), ChiSq: 129, Time: 00:00:04 / 00:00:05
40000 of 50000, Atoms: 77(A), 52(P), ChiSq: 96, Time: 00:00:05 / 00:00:05
50000 of 50000, Atoms: 73(A), 49(P), ChiSq: 127, Time: 00:00:06 / 00:00:06
trying URL 'https://zenodo.org/record/7709664/files/inputdata.Rds'
Content type 'application/octet-stream' length 433262849 bytes (413.2 MB)
==================================================
downloaded 413.2 MB
trying URL 'https://zenodo.org/record/7709664/files/cogapsresult.Rds?download=1'
Content type 'application/octet-stream' length 44220317 bytes (42.2 MB)
==================================================
downloaded 42.2 MB
Quitting from lines 427-428 [unnamed-chunk-6] (CoGAPS.Rmd)
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
Unable to query any Ensembl site
--- failed re-building ‘CoGAPS.Rmd’
SUMMARY: processing the following file failed:
‘CoGAPS.Rmd’
Error: Vignette re-building failed.
Execution halted