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This page was generated on 2024-03-29 11:35:51 -0400 (Fri, 29 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4404
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4427
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 400/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CoGAPS 3.22.0  (landing page)
Elana J. Fertig
Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/CoGAPS
git_branch: RELEASE_3_18
git_last_commit: 4118fd6
git_last_commit_date: 2023-10-24 09:44:27 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for CoGAPS on nebbiolo2


To the developers/maintainers of the CoGAPS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoGAPS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CoGAPS
Version: 3.22.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
StartedAt: 2024-03-27 16:34:22 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 16:42:10 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 468.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
###
##############################################################################
##############################################################################


* checking for file ‘CoGAPS/DESCRIPTION’ ... OK
* preparing ‘CoGAPS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CoGAPS.Rmd’ using rmarkdown
Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
10000 of 50000, Atoms: 67(A), 34(P), ChiSq: 332, Time: 00:00:00 / 00:00:00
20000 of 50000, Atoms: 73(A), 33(P), ChiSq: 175, Time: 00:00:00 / 00:00:00
30000 of 50000, Atoms: 79(A), 37(P), ChiSq: 153, Time: 00:00:01 / 00:00:03
40000 of 50000, Atoms: 83(A), 36(P), ChiSq: 112, Time: 00:00:01 / 00:00:02
50000 of 50000, Atoms: 73(A), 30(P), ChiSq: 149, Time: 00:00:02 / 00:00:04
-- Sampling Phase --
10000 of 50000, Atoms: 86(A), 40(P), ChiSq: 110, Time: 00:00:02 / 00:00:03
20000 of 50000, Atoms: 81(A), 32(P), ChiSq: 148, Time: 00:00:03 / 00:00:04
30000 of 50000, Atoms: 84(A), 33(P), ChiSq: 138, Time: 00:00:03 / 00:00:03
40000 of 50000, Atoms: 80(A), 40(P), ChiSq: 170, Time: 00:00:04 / 00:00:04
50000 of 50000, Atoms: 82(A), 43(P), ChiSq: 85, Time: 00:00:04 / 00:00:04
trying URL 'https://zenodo.org/record/7709664/files/inputdata.Rds'
Content type 'application/octet-stream' length 433262849 bytes (413.2 MB)
==================================================
downloaded 413.2 MB

trying URL 'https://zenodo.org/record/7709664/files/cogapsresult.Rds?download=1'
Content type 'application/octet-stream' length 44220317 bytes (42.2 MB)
==================================================
downloaded 42.2 MB


Quitting from lines 427-428 [unnamed-chunk-6] (CoGAPS.Rmd)
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
Unable to query any Ensembl site
--- failed re-building ‘CoGAPS.Rmd’

SUMMARY: processing the following file failed:
  ‘CoGAPS.Rmd’

Error: Vignette re-building failed.
Execution halted