Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-06-18 17:58 -0400 (Tue, 18 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4758
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4492
merida1macOS 12.7.4 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4464
kjohnson1macOS 13.6.6 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 312/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Cepo 1.10.0  (landing page)
Hani Jieun Kim
Snapshot Date: 2024-06-16 14:00 -0400 (Sun, 16 Jun 2024)
git_url: https://git.bioconductor.org/packages/Cepo
git_branch: RELEASE_3_19
git_last_commit: d41912a
git_last_commit_date: 2024-04-30 11:38:35 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped


BUILD results for Cepo on palomino3

To the developers/maintainers of the Cepo package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Cepo.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Cepo
Version: 1.10.0
Command: chmod a+r Cepo -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Cepo
StartedAt: 2024-06-16 17:55:38 -0400 (Sun, 16 Jun 2024)
EndedAt: 2024-06-16 17:57:45 -0400 (Sun, 16 Jun 2024)
EllapsedTime: 126.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r Cepo -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Cepo
###
##############################################################################
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* checking for file 'Cepo/DESCRIPTION' ... OK
* preparing 'Cepo':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'cepo.Rmd' using rmarkdown

Quitting from lines 284-297 [gsea] (cepo.Rmd)
Error: processing vignette 'cepo.Rmd' failed with diagnostics:
unable to find an inherited method for function 'geneIds' for signature 'object = "list"'
--- failed re-building 'cepo.Rmd'

SUMMARY: processing the following file failed:
  'cepo.Rmd'

Error: Vignette re-building failed.
Execution halted