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This page was generated on 2024-07-11 14:51 -0400 (Thu, 11 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4675
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 342/425HostnameOS / ArchINSTALLBUILDCHECK
sampleClassifierData 1.29.0  (landing page)
Khadija El Amrani
Snapshot Date: 2024-07-11 07:30 -0400 (Thu, 11 Jul 2024)
git_url: https://git.bioconductor.org/packages/sampleClassifierData
git_branch: devel
git_last_commit: e9632f9
git_last_commit_date: 2024-04-30 11:08:05 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for sampleClassifierData on nebbiolo2

To the developers/maintainers of the sampleClassifierData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: sampleClassifierData
Version: 1.29.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:sampleClassifierData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings sampleClassifierData_1.29.0.tar.gz
StartedAt: 2024-07-11 11:57:02 -0400 (Thu, 11 Jul 2024)
EndedAt: 2024-07-11 11:58:36 -0400 (Thu, 11 Jul 2024)
EllapsedTime: 94.5 seconds
RetCode: 0
Status:   OK  
CheckDir: sampleClassifierData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:sampleClassifierData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings sampleClassifierData_1.29.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/sampleClassifierData.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘sampleClassifierData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sampleClassifierData’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sampleClassifierData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 15.4Mb
  sub-directories of 1Mb or more:
    data  15.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 1 marked UTF-8 string
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-data-experiment/meat/sampleClassifierData.Rcheck/00check.log’
for details.


Installation output

sampleClassifierData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL sampleClassifierData
###
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘sampleClassifierData’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sampleClassifierData)

Tests output


Example timings

sampleClassifierData.Rcheck/sampleClassifierData-Ex.timings

nameusersystemelapsed
se_micro_refmat1.1080.0311.140
se_micro_testmat0.1300.0070.137
se_rnaseq_refmat0.7320.0320.763
se_rnaseq_testmat0.6540.0360.690