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This page was generated on 2022-05-24 14:50:31 -0400 (Tue, 24 May 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 RC (2022-04-21 r82226) -- "Vigorous Calisthenics" 4357
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for pasillaBamSubset on nebbiolo2


To the developers/maintainers of the pasillaBamSubset package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 266/407HostnameOS / ArchINSTALLBUILDCHECK
pasillaBamSubset 0.35.0  (landing page)
Hervé Pagès
Snapshot Date: 2022-05-24 07:30:02 -0400 (Tue, 24 May 2022)
git_url: https://git.bioconductor.org/packages/pasillaBamSubset
git_branch: master
git_last_commit: aede374
git_last_commit_date: 2022-04-26 13:02:42 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: pasillaBamSubset
Version: 0.35.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:pasillaBamSubset.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --no-vignettes --timings pasillaBamSubset_0.35.0.tar.gz
StartedAt: 2022-05-24 11:38:33 -0400 (Tue, 24 May 2022)
EndedAt: 2022-05-24 11:38:44 -0400 (Tue, 24 May 2022)
EllapsedTime: 10.7 seconds
RetCode: 0
Status:   OK  
CheckDir: pasillaBamSubset.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:pasillaBamSubset.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --no-vignettes --timings pasillaBamSubset_0.35.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/pasillaBamSubset.Rcheck’
* using R version 4.2.0 RC (2022-04-21 r82226)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pasillaBamSubset/DESCRIPTION’ ... OK
* this is package ‘pasillaBamSubset’ version ‘0.35.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pasillaBamSubset’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 16.0Mb
  sub-directories of 1Mb or more:
    extdata  15.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/pasillaBamSubset.Rcheck/00check.log’
for details.



Installation output

pasillaBamSubset.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL pasillaBamSubset
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/library’
* installing *source* package ‘pasillaBamSubset’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pasillaBamSubset)

Tests output


Example timings

pasillaBamSubset.Rcheck/pasillaBamSubset-Ex.timings

nameusersystemelapsed
pasillaBamSubset-package0.0010.0000.001