Multiple platform build/check report for BioC 3.19 - BUILD results for pmp on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"	4676
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences"	4414
merida1	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"	4441
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences"	4417
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the pmp package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pmp.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pmp
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* checking for file ‘pmp/DESCRIPTION’ ... OK
* preparing ‘pmp’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pmp_vignette_peak_matrix_processing_for_metabolomics_datasets.Rmd’ using rmarkdown

Quitting from lines 227-232 [plot_glog] (pmp_vignette_peak_matrix_processing_for_metabolomics_datasets.Rmd)
Error: processing vignette 'pmp_vignette_peak_matrix_processing_for_metabolomics_datasets.Rmd' failed with diagnostics:
Problem while computing aesthetics.
ℹ Error occurred in the 2nd layer.
Caused by error in `data[["lambda"]]`:
! object of type 'closure' is not subsettable
--- failed re-building ‘pmp_vignette_peak_matrix_processing_for_metabolomics_datasets.Rmd’

--- re-building ‘pmp_vignette_sbc_spectral_quality_assessment.Rmd’ using rmarkdown
2024-03-01 21:39:09.054 R[52568:917369539] XType: com.apple.fonts is not accessible.
2024-03-01 21:39:09.056 R[52568:917369539] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘pmp_vignette_sbc_spectral_quality_assessment.Rmd’

--- re-building ‘pmp_vignette_signal_batch_correction_mass_spectrometry.Rmd’ using rmarkdown
--- finished re-building ‘pmp_vignette_signal_batch_correction_mass_spectrometry.Rmd’

SUMMARY: processing the following file failed:
  ‘pmp_vignette_peak_matrix_processing_for_metabolomics_datasets.Rmd’

Error: Vignette re-building failed.
Execution halted

BUILD results for pmp on merida1

Summary

Command output