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This page was generated on 2023-03-23 11:07:17 -0400 (Thu, 23 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" 4536
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" 4298
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" 4290
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for TCGAutils on merida1


To the developers/maintainers of the TCGAutils package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TCGAutils.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2039/2189HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCGAutils 1.19.2  (landing page)
Marcel Ramos
Snapshot Date: 2023-03-22 14:00:17 -0400 (Wed, 22 Mar 2023)
git_url: https://git.bioconductor.org/packages/TCGAutils
git_branch: devel
git_last_commit: a6a632e
git_last_commit_date: 2023-02-13 17:53:43 -0400 (Mon, 13 Feb 2023)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: TCGAutils
Version: 1.19.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAutils
StartedAt: 2023-03-22 21:48:48 -0400 (Wed, 22 Mar 2023)
EndedAt: 2023-03-22 21:53:38 -0400 (Wed, 22 Mar 2023)
EllapsedTime: 289.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAutils
###
##############################################################################
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* checking for file ‘TCGAutils/DESCRIPTION’ ... OK
* preparing ‘TCGAutils’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘TCGAutils.Rmd’ using rmarkdown
Quitting from lines 303-311 (TCGAutils.Rmd) 
Error: processing vignette 'TCGAutils.Rmd' failed with diagnostics:
Timeout was reached: [api.gdc.cancer.gov] Resolving timed out after 10000 milliseconds
--- failed re-building ‘TCGAutils.Rmd’

SUMMARY: processing the following file failed:
  ‘TCGAutils.Rmd’

Error: Vignette re-building failed.
Execution halted