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This page was generated on 2023-03-28 11:07:15 -0400 (Tue, 28 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" 4547
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" 4308
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" 4301
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for RNAinteract on merida1


To the developers/maintainers of the RNAinteract package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAinteract.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1716/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RNAinteract 1.47.0  (landing page)
Mike Smith
Snapshot Date: 2023-03-27 14:00:21 -0400 (Mon, 27 Mar 2023)
git_url: https://git.bioconductor.org/packages/RNAinteract
git_branch: devel
git_last_commit: cdc9458
git_last_commit_date: 2022-11-01 11:05:38 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: RNAinteract
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RNAinteract.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RNAinteract_1.47.0.tar.gz
StartedAt: 2023-03-28 05:53:10 -0400 (Tue, 28 Mar 2023)
EndedAt: 2023-03-28 06:01:23 -0400 (Tue, 28 Mar 2023)
EllapsedTime: 493.1 seconds
RetCode: 0
Status:   OK  
CheckDir: RNAinteract.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RNAinteract.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RNAinteract_1.47.0.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/RNAinteract.Rcheck’
* using R Under development (unstable) (2023-03-16 r83985)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* R was compiled by
    Apple clang version 12.0.0 (clang-1200.0.32.29)
    GNU Fortran (GCC) 8.2.0
* running under: macOS Mojave 10.14.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RNAinteract/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RNAinteract’ version ‘1.47.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RNAinteract’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘ICS’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.17-bioc/meat/RNAinteract.Rcheck/00check.log’
for details.



Installation output

RNAinteract.Rcheck/00install.out

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##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RNAinteract
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3/Resources/library’
* installing *source* package ‘RNAinteract’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RNAinteract)

Tests output


Example timings

RNAinteract.Rcheck/RNAinteract-Ex.timings

nameusersystemelapsed
RNAinteract-class0.0030.0010.008
bindsamples0.2360.0060.318
computePI0.0320.0030.044
computePValues0.2120.0040.288
embedPCA0.0200.0020.032
estimateMainEffect1.9070.0612.599
getData0.7910.0071.066
getMain0.0110.0050.021
getReplicateData0.0350.0030.048
getSampleNames0.0070.0020.011
getScale0.0060.0010.012
grid.sgiHeatmap0.1150.0020.150
normalizeMainEffectQuery0.1000.0030.127
normalizeMainEffectTemplate0.0800.0040.108
normalizePlateEffect2.9380.1354.157
plotDoublePerturbation0.0790.0090.114
plotHeatmap0.0920.0020.127
reportAnnotation0.0350.0040.053
sgi0.0090.0010.014
sgisubset0.0140.0020.021
startReport0.0290.0030.044
summarizeSamples0.2030.0020.263