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This page was generated on 2024-02-20 11:38:25 -0500 (Tue, 20 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4690
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4443
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4464
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Package 2081/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
survcomp 1.52.0  (landing page)
Benjamin Haibe-Kains
Snapshot Date: 2024-02-19 14:05:07 -0500 (Mon, 19 Feb 2024)
git_url: https://git.bioconductor.org/packages/survcomp
git_branch: RELEASE_3_18
git_last_commit: 6e3bbe2
git_last_commit_date: 2023-10-24 09:46:20 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD BIN results for survcomp on lconway


To the developers/maintainers of the survcomp package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/survcomp.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: survcomp
Version: 1.52.0
Command: rm -rf survcomp.buildbin-libdir && mkdir survcomp.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh survcomp_1.52.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R survcomp.buildbin-libdir
StartedAt: 2024-02-20 00:48:49 -0500 (Tue, 20 Feb 2024)
EndedAt: 2024-02-20 00:49:08 -0500 (Tue, 20 Feb 2024)
EllapsedTime: 19.2 seconds
RetCode: 0
Status:   OK  
PackageFile: survcomp_1.52.0.tgz
PackageFileSize: 828.1 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf survcomp.buildbin-libdir && mkdir survcomp.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh survcomp_1.52.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R survcomp.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=survcomp.buildbin-libdir survcomp_1.52.0.tar.gz'
>>>>>>> 

* installing *source* package ‘survcomp’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c concordance.index.c -o concordance.index.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o
foo_mrmr_ensemble_surv.cpp:191:27: warning: unused variable 'ustrat_x' [-Wunused-variable]
        int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x;
                                 ^
foo_mrmr_ensemble_surv.cpp:191:17: warning: unused variable 'msurv_x' [-Wunused-variable]
        int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x;
                       ^
foo_mrmr_ensemble_surv.cpp:351:7: warning: unused variable 'cnt_back' [-Wunused-variable]
                int cnt_back=cnt2;
                    ^
foo_mrmr_ensemble_surv.cpp:286:7: warning: unused variable 'nsub' [-Wunused-variable]
        int  nsub, *prev_sel,nsamples_boot=nsamples,*to_remove;
             ^
foo_mrmr_ensemble_surv.cpp:387:10: warning: unused variable 'mim' [-Wunused-variable]
        double *mim, *boot_val, *mat_info;
                ^
foo_mrmr_ensemble_surv.cpp:439:9: warning: unused variable 'max_val' [-Wunused-variable]
        double max_val=-1000;
               ^
foo_mrmr_ensemble_surv.cpp:437:15: warning: variable 'jmax' set but not used [-Wunused-but-set-variable]
        unsigned int jmax;
                     ^
foo_mrmr_ensemble_surv.cpp:467:7: warning: unused variable 'found' [-Wunused-variable]
        bool found=false;
             ^
foo_mrmr_ensemble_surv.cpp:578:66: warning: unused variable 'prev_sel_tmp' [-Wunused-variable]
        int  *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete;
                                                                        ^
foo_mrmr_ensemble_surv.cpp:578:48: warning: unused variable 'tmp_val_max_ind' [-Wunused-variable]
        int  *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete;
                                                      ^
foo_mrmr_ensemble_surv.cpp:578:24: warning: unused variable 'nsamples_boot' [-Wunused-variable]
        int  *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete;
                              ^
foo_mrmr_ensemble_surv.cpp:579:63: warning: variable 'vec_local_max_sd' set but not used [-Wunused-but-set-variable]
        double *vec_mean, *vec_sort, *vec_sd,  *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr;
                                                                     ^
foo_mrmr_ensemble_surv.cpp:579:21: warning: unused variable 'vec_sort' [-Wunused-variable]
        double *vec_mean, *vec_sort, *vec_sd,  *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr;
                           ^
foo_mrmr_ensemble_surv.cpp:817:7: warning: unused variable 'ind' [-Wunused-variable]
                int ind=0;
                    ^
foo_mrmr_ensemble_surv.cpp:801:13: warning: unused variable 'cnt2' [-Wunused-variable]
                int cnt=1,cnt2=0;
                          ^
foo_mrmr_ensemble_surv.cpp:804:7: warning: unused variable 'rootdepth' [-Wunused-variable]
                int rootdepth=res_tree.depth(it_final);
                    ^
foo_mrmr_ensemble_surv.cpp:734:6: warning: unused variable 'vec_tmp' [-Wunused-variable]
        int vec_tmp;
            ^
foo_mrmr_ensemble_surv.cpp:733:39: warning: unused variable 'res_all2' [-Wunused-variable]
        int *predn, *rep_boot,*res,*res_all,*res_all2, *namat;
                                             ^
foo_mrmr_ensemble_surv.cpp:733:30: warning: unused variable 'res_all' [-Wunused-variable]
        int *predn, *rep_boot,*res,*res_all,*res_all2, *namat;
                                    ^
foo_mrmr_ensemble_surv.cpp:821:16: warning: variable 'res_old' is uninitialized when used here [-Wuninitialized]
                                res_all[k]=res_old[k];
                                           ^~~~~~~
foo_mrmr_ensemble_surv.cpp:816:25: note: initialize the variable 'res_old' to silence this warning
                int *res_all, *res_old;
                                      ^
                                       = nullptr
In file included from foo_mrmr_ensemble_surv.cpp:1:
In file included from ./foo_mrmr_ensemble_surv.h:10:
./tree.h:505:18: warning: 'allocate' is deprecated [-Wdeprecated-declarations]
   head = alloc_.allocate(1,0); // MSVC does not have default second argument 
                 ^
./tree.h:530:2: note: in instantiation of member function 'tree<int>::head_initialise_' requested here
        head_initialise_();
        ^
foo_mrmr_ensemble_surv.cpp:611:24: note: in instantiation of member function 'tree<int>::tree' requested here
        tree<int> res_tmp_new=res ;
                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1668:61: note: 'allocate' has been explicitly marked deprecated here
    _LIBCPP_NODISCARD_AFTER_CXX17 _LIBCPP_INLINE_VISIBILITY _LIBCPP_DEPRECATED_IN_CXX17
                                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1058:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from foo_mrmr_ensemble_surv.cpp:1:
In file included from ./foo_mrmr_ensemble_surv.h:10:
./tree.h:506:16: warning: 'allocate' is deprecated [-Wdeprecated-declarations]
        feet = alloc_.allocate(1,0);
                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1668:61: note: 'allocate' has been explicitly marked deprecated here
    _LIBCPP_NODISCARD_AFTER_CXX17 _LIBCPP_INLINE_VISIBILITY _LIBCPP_DEPRECATED_IN_CXX17
                                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1058:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from foo_mrmr_ensemble_surv.cpp:1:
In file included from ./foo_mrmr_ensemble_surv.h:10:
./tree.h:1122:26: warning: 'allocate' is deprecated [-Wdeprecated-declarations]
        tree_node* tmp = alloc_.allocate(1,0);
                                ^
./tree.h:547:6: note: in instantiation of function template specialization 'tree<int>::replace<tree<int>::pre_order_iterator>' requested here
                to=replace(to, it);
                   ^
./tree.h:531:2: note: in instantiation of member function 'tree<int>::copy_' requested here
        copy_(other);
        ^
foo_mrmr_ensemble_surv.cpp:611:24: note: in instantiation of member function 'tree<int>::tree' requested here
        tree<int> res_tmp_new=res ;
                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1668:61: note: 'allocate' has been explicitly marked deprecated here
    _LIBCPP_NODISCARD_AFTER_CXX17 _LIBCPP_INLINE_VISIBILITY _LIBCPP_DEPRECATED_IN_CXX17
                                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1058:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from foo_mrmr_ensemble_surv.cpp:1:
In file included from ./foo_mrmr_ensemble_surv.h:10:
./tree.h:505:18: warning: 'allocate' is deprecated [-Wdeprecated-declarations]
   head = alloc_.allocate(1,0); // MSVC does not have default second argument 
                 ^
./tree.h:476:2: note: in instantiation of member function 'tree<double>::head_initialise_' requested here
        head_initialise_();
        ^
foo_mrmr_ensemble_surv.cpp:620:15: note: in instantiation of member function 'tree<double>::tree' requested here
        tree<double> res_mrmr;
                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1668:61: note: 'allocate' has been explicitly marked deprecated here
    _LIBCPP_NODISCARD_AFTER_CXX17 _LIBCPP_INLINE_VISIBILITY _LIBCPP_DEPRECATED_IN_CXX17
                                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1058:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from foo_mrmr_ensemble_surv.cpp:1:
In file included from ./foo_mrmr_ensemble_surv.h:10:
./tree.h:506:16: warning: 'allocate' is deprecated [-Wdeprecated-declarations]
        feet = alloc_.allocate(1,0);
                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1668:61: note: 'allocate' has been explicitly marked deprecated here
    _LIBCPP_NODISCARD_AFTER_CXX17 _LIBCPP_INLINE_VISIBILITY _LIBCPP_DEPRECATED_IN_CXX17
                                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1058:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from foo_mrmr_ensemble_surv.cpp:1:
In file included from ./foo_mrmr_ensemble_surv.h:10:
./tree.h:998:26: warning: 'allocate' is deprecated [-Wdeprecated-declarations]
        tree_node* tmp = alloc_.allocate(1,0);
                                ^
foo_mrmr_ensemble_surv.cpp:625:11: note: in instantiation of function template specialization 'tree<double>::insert<tree<double>::pre_order_iterator>' requested here
        res_mrmr.insert(top_mrmr, predn);
                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1668:61: note: 'allocate' has been explicitly marked deprecated here
    _LIBCPP_NODISCARD_AFTER_CXX17 _LIBCPP_INLINE_VISIBILITY _LIBCPP_DEPRECATED_IN_CXX17
                                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1058:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from foo_mrmr_ensemble_surv.cpp:1:
In file included from ./foo_mrmr_ensemble_surv.h:10:
./tree.h:886:26: warning: 'allocate' is deprecated [-Wdeprecated-declarations]
        tree_node* tmp = alloc_.allocate(1,0);
                                ^
foo_mrmr_ensemble_surv.cpp:690:17: note: in instantiation of function template specialization 'tree<int>::append_child<tree<int>::pre_order_iterator>' requested here
                                res_tmp_new.append_child(it_local,vec_sol_local[k]);
                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1668:61: note: 'allocate' has been explicitly marked deprecated here
    _LIBCPP_NODISCARD_AFTER_CXX17 _LIBCPP_INLINE_VISIBILITY _LIBCPP_DEPRECATED_IN_CXX17
                                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1058:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from foo_mrmr_ensemble_surv.cpp:1:
In file included from ./foo_mrmr_ensemble_surv.h:10:
./tree.h:886:26: warning: 'allocate' is deprecated [-Wdeprecated-declarations]
        tree_node* tmp = alloc_.allocate(1,0);
                                ^
foo_mrmr_ensemble_surv.cpp:691:14: note: in instantiation of function template specialization 'tree<double>::append_child<tree<double>::pre_order_iterator>' requested here
                                res_mrmr.append_child(it_mrmr_local,vec_sol_local_mrmr[k]);
                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1668:61: note: 'allocate' has been explicitly marked deprecated here
    _LIBCPP_NODISCARD_AFTER_CXX17 _LIBCPP_INLINE_VISIBILITY _LIBCPP_DEPRECATED_IN_CXX17
                                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1058:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from foo_mrmr_ensemble_surv.cpp:1:
In file included from ./foo_mrmr_ensemble_surv.h:10:
./tree.h:998:26: warning: 'allocate' is deprecated [-Wdeprecated-declarations]
        tree_node* tmp = alloc_.allocate(1,0);
                                ^
foo_mrmr_ensemble_surv.cpp:788:16: note: in instantiation of function template specialization 'tree<int>::insert<tree<int>::pre_order_iterator>' requested here
                one=res_tree.insert(top, predn[i]);
                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1668:61: note: 'allocate' has been explicitly marked deprecated here
    _LIBCPP_NODISCARD_AFTER_CXX17 _LIBCPP_INLINE_VISIBILITY _LIBCPP_DEPRECATED_IN_CXX17
                                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1058:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
29 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c foo_mrmr_surv.cpp -o foo_mrmr_surv.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c survcomp_init.cpp -o survcomp_init.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o survcomp.so concordance.index.o foo_mrmr_ensemble_surv.o foo_mrmr_surv.o survcomp_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.18-bioc/meat/survcomp.buildbin-libdir/00LOCK-survcomp/00new/survcomp/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (survcomp)


>>>>>>> 
>>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR survcomp.buildbin-libdir/survcomp/libs/survcomp.so
>>>>>>> 

>>>>>>> Paths before fix:
survcomp.buildbin-libdir/survcomp/libs/survcomp.so:
	survcomp.so (compatibility version 0.0.0, current version 0.0.0)
	/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libR.dylib (compatibility version 4.3.0, current version 4.3.2)
	/System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1775.118.101)
	/usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)

>>>>>>> Fix with install_name_tool:
install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libgcc_s.1.1.dylib" "survcomp.buildbin-libdir/survcomp/libs/survcomp.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libgfortran.5.dylib" "survcomp.buildbin-libdir/survcomp/libs/survcomp.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libquadmath.0.dylib" "survcomp.buildbin-libdir/survcomp/libs/survcomp.so"

>>>>>>> Paths after fix:
survcomp.buildbin-libdir/survcomp/libs/survcomp.so:
	survcomp.so (compatibility version 0.0.0, current version 0.0.0)
	/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libR.dylib (compatibility version 4.3.0, current version 4.3.2)
	/System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1775.118.101)
	/usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)