Multiple platform build/check report for BioC 3.17 - BUILD results for mitoClone2 on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.2 LTS)	x86_64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4626
palomino3	Windows Server 2022 Datacenter	x64	4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"	4379
merida1	macOS 12.6.4 Monterey	x86_64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4395
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the mitoClone2 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mitoClone2.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mitoClone2
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* checking for file ‘mitoClone2/DESCRIPTION’ ... OK
* preparing ‘mitoClone2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘mitoClone2’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -D_FILE_OFFSET_BITS=64 ../inst/SCITEpkg/*.cpp -o scite
../inst/SCITEpkg/findBestTrees.cpp:100:141: error: reference to 'sample' is ambiguous
        sampleOutput = runMCMCbeta(optimalTrees, errorRates, rep, loops, gamma, moveProbs, n, m, dataMatrix, scoreType, trueParentVec, sampleStep, sample, chi, priorSd, useTreeList, treeType);
                                                                                                                                                   ^
../inst/SCITEpkg/findBestTrees.cpp:61:6: note: candidate found by name lookup is 'sample'
bool sample = false;
     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/algorithm:3227:17: note: candidate found by name lookup is 'std::sample'
_SampleIterator sample(_PopulationIterator __first,
                ^
../inst/SCITEpkg/findBestTrees.cpp:289:5: error: reference to 'sample' is ambiguous
                                sample = true;
                                ^
../inst/SCITEpkg/findBestTrees.cpp:61:6: note: candidate found by name lookup is 'sample'
bool sample = false;
     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/algorithm:3227:17: note: candidate found by name lookup is 'std::sample'
_SampleIterator sample(_PopulationIterator __first,
                ^
2 errors generated.
../inst/SCITEpkg/mcmcBinTreeMove.cpp:75:1: warning: non-void function does not return a value in all control paths [-Wreturn-type]
}
^
1 warning generated.
make: *** [scite] Error 1
ERROR: compilation failed for package ‘mitoClone2’
* removing ‘/private/tmp/RtmpPHdJsW/Rinst4b8470ae6ac8/mitoClone2’
      -----------------------------------
ERROR: package installation failed

BUILD results for mitoClone2 on merida1

Summary

Command output