Back to Multiple platform build/check report for BioC 3.17:   simplified   long
ABCDEFG[H]IJKLMNOPQRSTUVWXYZ

This page was generated on 2023-03-31 11:03:08 -0400 (Fri, 31 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" 4547
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" 4308
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for h5vc on palomino3


To the developers/maintainers of the h5vc package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/h5vc.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 894/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
h5vc 2.33.0  (landing page)
Paul Theodor Pyl
Snapshot Date: 2023-03-30 14:00:16 -0400 (Thu, 30 Mar 2023)
git_url: https://git.bioconductor.org/packages/h5vc
git_branch: devel
git_last_commit: a9ce41f
git_last_commit_date: 2022-11-01 11:08:58 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

Summary

Package: h5vc
Version: 2.33.0
Command: chmod a+r h5vc -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data h5vc
StartedAt: 2023-03-30 19:28:57 -0400 (Thu, 30 Mar 2023)
EndedAt: 2023-03-30 19:29:53 -0400 (Thu, 30 Mar 2023)
EllapsedTime: 55.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r h5vc -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data h5vc
###
##############################################################################
##############################################################################


* checking for file 'h5vc/DESCRIPTION' ... OK
* preparing 'h5vc':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'h5vc.simple.genome.browser.Rmd' using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
  Please specify either 'title' or 'pagetitle' in the metadata,
  e.g. by using --metadata pagetitle="..." on the command line.
  Falling back to 'h5vc.simple.genome.browser.knit'
--- finished re-building 'h5vc.simple.genome.browser.Rmd'

--- re-building 'h5vc.tour.Rmd' using rmarkdown
Quitting from lines 234-254 (h5vc.tour.Rmd) 
Error: processing vignette 'h5vc.tour.Rmd' failed with diagnostics:
'start' and 'end' must be numeric vectors
--- failed re-building 'h5vc.tour.Rmd'

SUMMARY: processing the following file failed:
  'h5vc.tour.Rmd'

Error: Vignette re-building failed.
Execution halted