Jiefei Wang
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/gpuMagic |
| git_branch: RELEASE_3_17 |
| git_last_commit: 42d6a9a |
| git_last_commit_date: 2023-04-25 11:10:00 -0400 (Tue, 25 Apr 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:36:12 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 872/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gpuMagic 1.16.0 (landing page) Jiefei Wang
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the gpuMagic package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gpuMagic.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gpuMagic |
| Version: 1.16.0 |
| Command: rm -rf gpuMagic.buildbin-libdir && mkdir gpuMagic.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=gpuMagic.buildbin-libdir gpuMagic_1.16.0.tar.gz |
| StartedAt: 2023-10-16 08:53:59 -0400 (Mon, 16 Oct 2023) |
| EndedAt: 2023-10-16 08:54:38 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 39.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: gpuMagic_1.16.0.zip |
| PackageFileSize: 1.804 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf gpuMagic.buildbin-libdir && mkdir gpuMagic.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=gpuMagic.buildbin-libdir gpuMagic_1.16.0.tar.gz
###
##############################################################################
##############################################################################
* installing *source* package 'gpuMagic' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -IF:/biocbuild/bbs-3.17-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c C_Interface.cpp -o C_Interface.o
C_Interface.cpp: In function 'SEXPREC* download(SEXP)':
C_Interface.cpp:142:19: warning: 'res' may be used uninitialized [-Wmaybe-uninitialized]
142 | return(res);
| ^
C_Interface.cpp:112:14: note: 'res' was declared here
112 | SEXP res;
| ^~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -IF:/biocbuild/bbs-3.17-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_functionRegistration.cpp -o R_functionRegistration.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -IF:/biocbuild/bbs-3.17-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Tools.cpp -o Tools.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -IF:/biocbuild/bbs-3.17-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kernelManager.cpp -o kernelManager.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -IF:/biocbuild/bbs-3.17-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c openArray.cpp -o openArray.o
g++ -shared -s -static-libgcc -o gpuMagic.dll tmp.def C_Interface.o R_functionRegistration.o Tools.o kernelManager.o openArray.o C:/Windows/system32/OpenCL.dll -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/meat/gpuMagic.buildbin-libdir/00LOCK-gpuMagic/00new/gpuMagic/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No device has been found, please make sure the computer has a graphic card or the driver has been properly installed.
Hint:
For CPU, you can install the intel's / ATI's graphic driver for the intel's / AMD's CPU respectively.
For GPU, you need to download the graphic driver from your vendor's website.
** testing if installed package can be loaded from final location
No device has been found, please make sure the computer has a graphic card or the driver has been properly installed.
Hint:
For CPU, you can install the intel's / ATI's graphic driver for the intel's / AMD's CPU respectively.
For GPU, you need to download the graphic driver from your vendor's website.
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'gpuMagic' as gpuMagic_1.16.0.zip
* DONE (gpuMagic)