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This page was generated on 2023-10-16 11:35:21 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 684/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fastseg 1.46.0  (landing page)
Alexander Blume
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/fastseg
git_branch: RELEASE_3_17
git_last_commit: f51432c
git_last_commit_date: 2023-04-25 10:21:47 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

INSTALL results for fastseg on nebbiolo1


To the developers/maintainers of the fastseg package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fastseg.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: fastseg
Version: 1.46.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL fastseg
StartedAt: 2023-10-15 15:13:04 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 15:13:17 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 13.1 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL fastseg
###
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘fastseg’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c R_init_fastseg.c -o R_init_fastseg.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c segment.cpp -o segment.o
segment.cpp: In function ‘SEXPREC* segment(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
segment.cpp:60:27: warning: variable ‘globalSd’ set but not used [-Wunused-but-set-variable]
   60 |         double globalMean,globalSd,diff,M2,globalVariance;
      |                           ^~~~~~~~
segment.cpp:61:16: warning: variable ‘oldStatistic’ set but not used [-Wunused-but-set-variable]
   61 |         double oldStatistic, meanLeft,meanRight,varLeft,varRight;
      |                ^~~~~~~~~~~~
segment.cpp:62:38: warning: variable ‘maxStatistic’ set but not used [-Wunused-but-set-variable]
   62 |         double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
      |                                      ^~~~~~~~~~~~
segment.cpp:63:47: warning: variable ‘maxIdx’ set but not used [-Wunused-but-set-variable]
   63 |         double newPValue, maxPValue,oldPValue,maxIdx;
      |                                               ^~~~~~
In file included from segment.cpp:10:
/home/biocbuild/bbs-3.17-bioc/R/include/Rmath.h:210:25: warning: unused variable ‘Rf_beta’ [-Wunused-variable]
  210 | #define beta            Rf_beta
      |                         ^~~~~~~
segment.cpp:65:16: note: in expansion of macro ‘beta’
   65 |         double beta,nn;
      |                ^~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp: In function ‘SEXPREC* segmentCyberT(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
segmentCyberT.cpp:59:27: warning: variable ‘globalSd’ set but not used [-Wunused-but-set-variable]
   59 |         double globalMean,globalSd,diff,M2,globalVariance;
      |                           ^~~~~~~~
segmentCyberT.cpp:60:16: warning: variable ‘oldStatistic’ set but not used [-Wunused-but-set-variable]
   60 |         double oldStatistic,meanLeft,meanRight,varLeft,varRight;
      |                ^~~~~~~~~~~~
segmentCyberT.cpp:61:38: warning: variable ‘maxStatistic’ set but not used [-Wunused-but-set-variable]
   61 |         double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
      |                                      ^~~~~~~~~~~~
In file included from segmentCyberT.cpp:10:
/home/biocbuild/bbs-3.17-bioc/R/include/Rmath.h:210:25: warning: unused variable ‘Rf_beta’ [-Wunused-variable]
  210 | #define beta            Rf_beta
      |                         ^~~~~~~
segmentCyberT.cpp:63:57: note: in expansion of macro ‘beta’
   63 |         double newStatisticBptLeft,newStatisticBptRight,beta,nn;
      |                                                         ^~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o fastseg.so R_init_fastseg.o segment.o segmentCyberT.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-fastseg/00new/fastseg/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastseg)